Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392436.1:2555580-2559831[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.29 17 6.4 0.0 3 23 98 119 96 119 0.94

2 28 0.036 2.1 9.2 1.7 2 23 140 162 139 162 0.94

3 28 0.13 7.6 7.5 6.9 1 23 167 190 167 190 0.94

4 28 0.26 15 6.5 0.3 1 23 195 218 195 218 0.91

5 28 0.55 32 5.5 0.6 2 23 221 243 220 243 0.94

6 28 0.055 3.2 8.7 1.3 2 20 250 268 246 270 0.90

7 28 0.0022 0.13 13.1 2.4 1 23 315 338 315 338 0.91

8 28 0.8 47 5.0 0.2 2 23 367 389 366 389 0.94

9 28 0.00025 0.014 16.1 0.3 1 22 411 432 411 434 0.90

10 28 8.7e-05 0.0051 17.5 0.2 3 23 441 462 440 462 0.96

11 28 0.0037 0.22 12.3 0.7 2 23 468 490 467 490 0.94

12 28 0.077 4.5 8.2 1.0 1 23 495 518 495 518 0.95

13 28 0.00062 0.036 14.8 4.2 1 23 522 545 522 545 0.97

14 28 0.012 0.68 10.8 2.2 2 23 552 573 551 573 0.96

15 28 1.3 76 4.3 3.9 1 23 620 642 620 642 0.95

16 28 0.0021 0.13 13.1 0.7 1 23 712 735 712 735 0.96

17 28 3.2e-05 0.0019 18.8 1.5 1 23 740 763 740 763 0.97

18 28 0.0021 0.12 13.1 2.9 1 23 768 791 768 791 0.97

19 28 3.4e-05 0.002 18.7 0.8 3 23 795 816 794 816 0.95

20 28 1.6 91 4.1 6.3 1 21 822 842 822 843 0.94

21 28 2.7 1.5e+02 3.4 2.7 1 23 896 919 896 919 0.94

22 28 2.3 1.3e+02 3.6 0.1 2 23 992 1015 991 1015 0.92

23 28 0.0001 0.006 17.2 2.3 3 23 1022 1043 1021 1043 0.93

24 28 0.014 0.8 10.6 1.6 2 23 1048 1070 1047 1070 0.94

25 28 0.06 3.5 8.5 2.8 1 23 1075 1098 1075 1098 0.94

26 28 9.1e-05 0.0053 17.4 5.7 1 23 1102 1125 1102 1125 0.97

27 28 0.00053 0.031 15.0 0.3 2 23 1132 1153 1131 1153 0.96

28 28 0.0092 0.54 11.1 1.2 1 23 1159 1181 1159 1181 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.29	17	6.4	0.0	3	23	98	119	96	119	0.94
2	28	0.036	2.1	9.2	1.7	2	23	140	162	139	162	0.94
3	28	0.13	7.6	7.5	6.9	1	23	167	190	167	190	0.94
4	28	0.26	15	6.5	0.3	1	23	195	218	195	218	0.91
5	28	0.55	32	5.5	0.6	2	23	221	243	220	243	0.94
6	28	0.055	3.2	8.7	1.3	2	20	250	268	246	270	0.90
7	28	0.0022	0.13	13.1	2.4	1	23	315	338	315	338	0.91
8	28	0.8	47	5.0	0.2	2	23	367	389	366	389	0.94
9	28	0.00025	0.014	16.1	0.3	1	22	411	432	411	434	0.90
10	28	8.7e-05	0.0051	17.5	0.2	3	23	441	462	440	462	0.96
11	28	0.0037	0.22	12.3	0.7	2	23	468	490	467	490	0.94
12	28	0.077	4.5	8.2	1.0	1	23	495	518	495	518	0.95
13	28	0.00062	0.036	14.8	4.2	1	23	522	545	522	545	0.97
14	28	0.012	0.68	10.8	2.2	2	23	552	573	551	573	0.96
15	28	1.3	76	4.3	3.9	1	23	620	642	620	642	0.95
16	28	0.0021	0.13	13.1	0.7	1	23	712	735	712	735	0.96
17	28	3.2e-05	0.0019	18.8	1.5	1	23	740	763	740	763	0.97
18	28	0.0021	0.12	13.1	2.9	1	23	768	791	768	791	0.97
19	28	3.4e-05	0.002	18.7	0.8	3	23	795	816	794	816	0.95
20	28	1.6	91	4.1	6.3	1	21	822	842	822	843	0.94
21	28	2.7	1.5e+02	3.4	2.7	1	23	896	919	896	919	0.94
22	28	2.3	1.3e+02	3.6	0.1	2	23	992	1015	991	1015	0.92
23	28	0.0001	0.006	17.2	2.3	3	23	1022	1043	1021	1043	0.93
24	28	0.014	0.8	10.6	1.6	2	23	1048	1070	1047	1070	0.94
25	28	0.06	3.5	8.5	2.8	1	23	1075	1098	1075	1098	0.94
26	28	9.1e-05	0.0053	17.4	5.7	1	23	1102	1125	1102	1125	0.97
27	28	0.00053	0.031	15.0	0.3	2	23	1132	1153	1131	1153	0.96
28	28	0.0092	0.54	11.1	1.2	1	23	1159	1181	1159	1181	0.98

Sequence Information

Coding Sequence: ATGGATGCCAGAAAGTCGTTACAGAAAAGCGTTTTCTTTTCAGATGAAAACGACCATGCATCTGGCTATGAAAAGAGGAGGACAAATCTGGAAATTTTGTTCAACTATACAACATTGATACCGTTTAAATGGCGTTCGAAGTATATGTGTTTTCACTGTTGCACTGACGTAGAATATACAGAGTTGAGAGAGCATACAAAATCCCACGGACACTGCACGTCCAATGACAAAGCCCTAAGAGACGTGACAGGAAAAGATGTCGAAGTTAAACTTGACGTTTCACACATTGCATGTGAAATATGCGAGGAGCCTTTTGAAAGTTTCGATGAAATCATAGATCATTTGATTGTTAAACATAAATTACCTTACAACAAGAACGCAGAATTGACACTGCAGCCGTATAGATTGGTGGATTTAAAGTGTTTGCTGTGCGACGAACATTTTAACTTCTTCAGTAAATTGATAGCTCACGTGAACAATAAACATCCGAAACACGAGTTTCGTTGTGATTTTTGTAAACACACTTTCAATAAGAAAAGGGATTTGGCCGCGCATTGTAGAATGTATCACAAGGAGGATGGATATAATTGTGATGAGTGCTTATTGAACTTTACATCAGTGAATGGTTTGAGAAGTCATAACACTTCCGTTCATCCGTCGATGTGTAACATTTGCTTTAACTCGTATCCAACGGTGAGGAATAAATTGAGGCACATAAAACTCGATCATAACGGACAGTGTCCGGTTAAATGTGGGTTTTGTTTGAAACAATTCACCACAAATAAGAGTTTTATCAAACACGCCGAGTCATGTACGAAGGAACTGTCCAAAAATAAAAATGTAGACGATGCGGGTAAAACGCAAATCAAGCAGATACGAAACAATTTAGCGTGTTTACTGAACATGTCTACAGTAATACCGTTTAAGAATTTCTTGAATAGGTTTCGGTGCTTTTACTGTCCTAAAGATTTCACTGAATGCTCGGAACTAAAAGAGCACACAGTCCTAGAACATCCGCATTGCGATATTAAGTTGAAAAGTATGAAATTAAGGAATAGAGCCAGATACGAGGGAGTTAAAGTTGATGTTTCCTCTCTATCGTGTAAAGTGTGCTGTGAAAGTTTTGATGAATTGGATCTTCTGATCGATCATCTAATCGTTGAGCACAAAGCTCGATACAATAAGGCCGTTGATCTGAGCTTGTTGCCATACAAGTTAATCAAAGATAACTATCCGTGTCCATATTGCAGTGAAGTTTTTAGATACTTTAGCACTTTATTAAGGCACGTGGGCCTCAGTCATACGGACAATAGGAACCTTTGCGTGTATTGTGGCAAATCATTTAGAACAGACGCGAGTCTTAGGGTTCATATTGCTTCGTATCACAAAACTAAAAGAATAAAGTGCCCCAATTGCACTATCCAATTCACGACCAATAACGCTCTGCATTCCCATCTAGGAAAAGCTCACGGCAAAAAGATATTTAGATGTACGAAGTGTTCGGAGAAATTTGTATCAGATTATGCAAAGTTGAAGCATCTGATCGTCACTCACGGCTCGGGACATAAGTGCGAATACTGTGGCAAGTTGTTTACAAAGAAATCCTTCATGGTGAATCACGTCAGGCGGACTCATTTGAAGGAGAAGAATGTCGAGTGCTCTGTGTGTCACGAGAGATTCTTCGACGTGCACTTGCTCAGAATGCACATGGTGAAGCATATGGGTGTTAGGAATTTTCATTGCGACATTTGCGATGCATACGAAGGGACGTATGAAAGGACCGCTGAACGCAGAAGGAAAAACTTGCAAATACTATTTAACAATACATCGGTAATACCGTTCAAATGGCGCGGACGTTACCTCTGTTTTTACTGTGGAGAGAATCATACAAATTATACAGATTTCAGAAAGCATACGTTATCTCACGGTCCGTGTACCACAAAAGATTATTCGCTCAAAGTGATTAAGGGAAATCACATTGAGATCAAAGTTGACGTGTCCGATATCACCTGCATTGTGTGCACTGAGCCCTTTAATAGTTTCAAGGAGATAATTGATCACTTGATCATAAAACACAGTTTGGAATACGATAGTAATGTCGACACTCCATTCCAAGAGTACAGATTGGTCGATTTCAGATGTCTCTTGTGTGATAAGCAGTTTTCCTACTTTGGTTATCTGGTTCAGCATGTGAACAACGCTCACCCGAACAATTGCTTCGTTTGTAACGATTGTAAAGCAACTTTCAACAAGAAAAGAGATCTGAGTGTGCACATGAGGAATTTTCATAGGCACGGAGGTTACAAATGCGAATTGTGCATGAAGATTTTCAAATCGCTCTTCACTCTGCGCAAACACCAGAAAAACATGCACTTTAGTTTCTGCAATTTTTGCGGCCTCAGTTTCTCCTCGAACAGTCTCCTACAGAAACACACACTGATCGATCATCCGGATGACGGTAGCTTCAAGTGTAATCATTGTGCCAAAATTTGCCATTCGTCGCAGGGGCTCAAGCAGCATTTCAAAAAGTGCAAAGCAAAACTTGCCTCGATTGAGCCAATGAAGAACCCTTTCGCGGAGGAGTGCGTGGAGCCCAAAAAGAAACAGGACTTGCAACAGATCAGACTGAATATACAGTGTGTCTTAAATATGTCCACTGCGATCCCTTTCAAATTTTTCTCCAGTTTTGCATGTTTCTATTGTTGCAAAAAGTTTGGTGAGTTCGAAGAGCTCAAGCAACATACGATCTCGGAGCATCCCGTGTGCGATGTAAAAGCGAATGCCATGAGAAATTGTAAAGGCGAACGAATAACTATAAAGATAGACGTCACGTCGTTGGCATGCAAACTTTGCTGCGTTGCGGTTGATAATATCGATGATCTCGTGGACCATTTGATCAAAAAACACACGGCCAACTATGATAAGTCTATAACGGGTTGCTTCGAACCGTACCGTGTCATGAAAGACAACATGCCCTGTCCCATCTGTCCAGATCTAGTGTTTAGATACTTCAACATACTCCTCAGACACATGAACTCCGTTCACAACAACAACAATAGGATATGCGATCATTGCGGTAGAAGTTTCAAGAGCGTGACCAATTTGAAAGTTCACATTGCTCACACGCACATGGCTTCCAGCGAATGCGACCTGTGCGGGGGGAAATTTAAGAATCAATGGTGTCTTTTAAGACACAAGGCGAGCACGCACGACGTGAAAAGCTACAAATGCTCAAAGTGTCCAGAGAAGTTTCTCTCTCAATACCACAAGCAGAAGCATTTGATCGAGGTGCACAATATAGGCCACAAGTGCAGTTACTGTAGCAAGATGTTCACCAGAAACTCGTTCATGAAAGACCACATACGCAGGTCGCATTTGAAGGAGAAGAACGTCTCGTGCGGGATATGCAACGAGAAGTTCTTTGACAATTATCTGTTGAAATTGCACATGGTGAAACATTACGACGACAGGAGGTTCAAATGCGAAGTGTGCGCAAAGGAGTTTCTGCGACGCAGTAATTTGGATTCGCACAAAAAGTTGCATAAGAAATATGGACATATTGCGGCGCAAACTTAA
Protein Sequence: MDARKSLQKSVFFSDENDHASGYEKRRTNLEILFNYTTLIPFKWRSKYMCFHCCTDVEYTELREHTKSHGHCTSNDKALRDVTGKDVEVKLDVSHIACEICEEPFESFDEIIDHLIVKHKLPYNKNAELTLQPYRLVDLKCLLCDEHFNFFSKLIAHVNNKHPKHEFRCDFCKHTFNKKRDLAAHCRMYHKEDGYNCDECLLNFTSVNGLRSHNTSVHPSMCNICFNSYPTVRNKLRHIKLDHNGQCPVKCGFCLKQFTTNKSFIKHAESCTKELSKNKNVDDAGKTQIKQIRNNLACLLNMSTVIPFKNFLNRFRCFYCPKDFTECSELKEHTVLEHPHCDIKLKSMKLRNRARYEGVKVDVSSLSCKVCCESFDELDLLIDHLIVEHKARYNKAVDLSLLPYKLIKDNYPCPYCSEVFRYFSTLLRHVGLSHTDNRNLCVYCGKSFRTDASLRVHIASYHKTKRIKCPNCTIQFTTNNALHSHLGKAHGKKIFRCTKCSEKFVSDYAKLKHLIVTHGSGHKCEYCGKLFTKKSFMVNHVRRTHLKEKNVECSVCHERFFDVHLLRMHMVKHMGVRNFHCDICDAYEGTYERTAERRRKNLQILFNNTSVIPFKWRGRYLCFYCGENHTNYTDFRKHTLSHGPCTTKDYSLKVIKGNHIEIKVDVSDITCIVCTEPFNSFKEIIDHLIIKHSLEYDSNVDTPFQEYRLVDFRCLLCDKQFSYFGYLVQHVNNAHPNNCFVCNDCKATFNKKRDLSVHMRNFHRHGGYKCELCMKIFKSLFTLRKHQKNMHFSFCNFCGLSFSSNSLLQKHTLIDHPDDGSFKCNHCAKICHSSQGLKQHFKKCKAKLASIEPMKNPFAEECVEPKKKQDLQQIRLNIQCVLNMSTAIPFKFFSSFACFYCCKKFGEFEELKQHTISEHPVCDVKANAMRNCKGERITIKIDVTSLACKLCCVAVDNIDDLVDHLIKKHTANYDKSITGCFEPYRVMKDNMPCPICPDLVFRYFNILLRHMNSVHNNNNRICDHCGRSFKSVTNLKVHIAHTHMASSECDLCGGKFKNQWCLLRHKASTHDVKSYKCSKCPEKFLSQYHKQKHLIEVHNIGHKCSYCSKMFTRNSFMKDHIRRSHLKEKNVSCGICNEKFFDNYLLKLHMVKHYDDRRFKCEVCAKEFLRRSNLDSHKKLHKKYGHIAAQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386949;
90% Identity: iTF_01386949;
80% Identity: -