Sfor007421.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000056.1:319405-323833[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.085 4.9 8.1 0.0 3 23 98 119 96 119 0.94 2 30 0.06 3.4 8.5 1.8 2 23 140 162 139 162 0.94 3 30 0.13 7.5 7.5 6.9 1 23 167 190 167 190 0.94 4 30 0.096 5.4 7.9 0.9 1 23 195 218 195 218 0.92 5 30 0.56 32 5.5 0.6 2 23 221 243 220 243 0.94 6 30 0.22 13 6.8 1.1 2 20 250 268 246 270 0.90 7 30 0.0022 0.12 13.1 2.4 1 23 313 336 313 336 0.91 8 30 0.81 46 5.0 0.2 2 23 365 387 364 387 0.94 9 30 0.00025 0.014 16.0 0.3 1 22 409 430 409 432 0.90 10 30 8.8e-05 0.005 17.5 0.2 3 23 439 460 438 460 0.96 11 30 0.0017 0.097 13.4 0.8 2 23 466 488 465 488 0.94 12 30 0.069 3.9 8.4 0.6 1 23 493 516 493 516 0.95 13 30 0.00062 0.035 14.8 4.2 1 23 520 543 520 543 0.97 14 30 0.011 0.65 10.8 2.3 2 23 550 571 549 571 0.96 15 30 0.81 46 5.0 1.0 1 10 577 586 577 590 0.95 16 30 7.4 4.2e+02 2.0 3.5 1 23 629 651 629 651 0.94 17 30 0.14 7.9 7.4 0.1 2 23 679 701 678 701 0.94 18 30 0.003 0.17 12.6 1.1 1 23 721 744 721 744 0.96 19 30 6.6e-05 0.0038 17.8 3.2 1 23 749 772 749 772 0.97 20 30 0.0021 0.12 13.1 2.9 1 23 777 800 777 800 0.97 21 30 2.5e-05 0.0014 19.2 1.5 3 23 804 825 803 825 0.96 22 30 0.79 45 5.0 7.2 1 21 831 851 831 852 0.94 23 30 0.81 46 5.0 2.6 1 23 905 928 905 928 0.95 24 30 2.3 1.3e+02 3.6 0.1 2 23 1001 1024 1000 1024 0.92 25 30 0.0001 0.0059 17.2 2.3 3 23 1031 1052 1030 1052 0.93 26 30 0.014 0.79 10.5 1.6 2 23 1057 1079 1056 1079 0.94 27 30 0.061 3.5 8.5 2.8 1 23 1084 1107 1084 1107 0.94 28 30 9.1e-05 0.0052 17.4 5.7 1 23 1111 1134 1111 1134 0.97 29 30 0.0004 0.023 15.4 0.4 2 23 1141 1162 1140 1162 0.96 30 30 0.0095 0.54 11.1 1.2 1 23 1168 1190 1168 1190 0.98
Sequence Information
- Coding Sequence
- ATGGATGCCAGAAAGTCGTTACAGAAAAGCGTTTCCTTTTCAGATGAAAACGACCATGCATCTGGCTATGAAAAGAGGAGGACAAATCTGGAAATATTGTTCAACTATACAACATTGATACCTTTTAAATGGCGTTCGAAGTATTTGTGTTTTCACTGTTGCACTGACGTAGAATATAGAGATTTGAGAGACCATACCAAATCCCATGGACACTGCACGTCAAATGACAAAGCCATAAGAGACGTGAAAGGAAAAGATGTCGAAGTTAAAATAGACGTTTCACACATTGCTTGTGAAATATGCAATGAGCCTTTTGAAAATTTCGATGAAATCATAGATCATTTGATCGTTAAGCATAAATTGCCATATAATAAGAACGCAGAATTGACTCTACAGCCTTATAGATTGGTTGATTTGAAGTGTTTGCTATGCGATGAACATTTTAACTTCTTCAGTAAATTGATAGTTCACGTCAACAATAAACATCCGAAACACGAGTTTCGTTGTGATTTTTGTAAACATACTTTCAATAAAAAAAGGGATTTGGCTGCGCATTGTAGAATGTATCACAAGGAGGATGGTTATAATTGTAAGGAGTGCTTATTGAACTTCACATCAGTGAATAGTTTAAGAAGTCATAACACTTCCGTTCATCCGTCGATGTGTAACATTTGCTTTAACTCGTATCCAACGGTGAGGAATAAATTGCGGCACATAAAACTCGACCATAACGGACAATGTCCGGTTAAATGCGGGTTTTGTTTGAAACTATTTAGCACAAATAAGAGTTTTATCAAACACGCCGAGTCATGTACCAAGGAACTGTCTAAAGATGTAGATGATGTGGGTAAAACGCAAATCAAGCAGATACGAAACAATTTAGCGTGTCTACTAAACATGTCTACCGTCATACCGTTTAAGAATTTCTTGAATAGGTTTCGATGTTTTTACTGTCCTAAAGATTTCACTGAATGCTCTGAACTAAAAGAGCACACTGTCCTAGAACATCCGCATTGTGATATTAAGTTGAAAAGTATGAAATTAAGGAATAGAGCCAGACACGAGGGAGTTAAAGTTGATGTTTCCTTTCTATCGTGTAAAGTGTGCTGTGAAAGTTTTGATGAATTGGATCTCCTGATCGATCACCTAATCGTTGAGCACAACGCTCGATACAATAAGGCTGTTGATCTGAGCTTGTTGCCATACAAGTTAATTAAAGATAACTATCCATGTCCATATTGCAGCGAAGTTTTTAGATACTTTAGCACTTTATTGAGGCACGTGGGCCTCAGTCATACGGACAATAGGAACCTTTGCGTATATTGTGGCAAATCCTTTAGAACAGACGCGAGTCTGAGGGTTCATATAGCGTCGTATCACAAAACAAAAAGAATCAAATGCCCCAATTGTTCCATCCGATTCACAACCAATAACGCCCTGCATTCCCATCTAGGAAAAGCGCACGGTAAAAAAATATTCAGATGTTCGAAGTGTTCAGAGAAATTTGTATCAGATTATGCAAAGTTGAAGCATCTTATCGTCATCCACGGTTCGGGACATAAATGCGAATACTGTGGCAAGTTGTTTACAAAGAAATCCTTCATGGTGAATCACGTCAGACGCACTCATTTGAAGGAGAAAAATGTCGAGTGCTCTGTGTGTCACGAGAGATTCTTCGACGTGCACTTGCTCAAAATGCACATGGTGAAGCACATGGGTGTTAGGAATTTTCATTGCGACATTTGCGGAAAGAAGTTTCTGTGGAAGAAAAATTTACGTGATGCATACGAAGGGACGTATGAAAGGACCGCTGAACGCAGAAGGAAAAACTTGCAAATACTATTTAACAATACATCAATCATACCTTTCAAATGGCGCGGACGTTACCTCTGTTTTTACTGTGGAGAGAATCATACGAAATATATAGATTTCAGAAAGCATACGTTATCTCACGGTCCGTGTTCCACAAAAGATTATTCGCTCAAAGTGATTAAGGGAAATCACATTGAGATCAAAGTTGACGTGTCCGATATCACCTGCAATGTGTGTACTGAGCCTTTTAATAGTTTCAAGGAGATAATTGATCACTTGATCATAAAACACAGTTTGGAATACGATAGTAATGTCGATACTCCATTCCAAGAGTACAGATTGGTCGATTTCAGATGTCTTTTGTGCGATAAGCAGTTTTCTTACTTTGGTTATCTGGTTCAGCACGTGAACAACTCTCACCCGAACAATTGCTTCGTTTGTCACGATTGTAAAGCAACTTTCAATAAGAAAAGAGATCTAAGTGTCCACATGAGGAATTTTCATAGGCAGGGTGGTTACAAATGCGAATTGTGCATGAAGATTTTCAAATCGCTATTCACTTTGCGTAAACATCAGAAAAACATGCACTTTAGTTTCTGCAATTTCTGCGGCCTCAGTTTCTCCTCGAACAGTCTCTTGAGGAAACACACACAGATGGATCATCCGGATGACGGTAGCTTCAAGTGTAATCATTGCGCAAAAACTTGCCATTCGTCGCAGGGGCTCAAACAGCATTTCAAGAAATGCAAGGCAAAACTTGCCTCGATTGAGCCAATGAAGAACCCTTTCACGGAGGAGTGCGTGGAACCCAAAAAGAAACAGGACTTGCAACAGATTAGACTGAATATACAGTGTGTTTTAAATATGTCCACTGCGATCCCTTTCAAATTTTTCTCCAGTTTTGCATGTTTTTATTGCTGCAAAAAGTTTGCCGAGTTCGAAGAGCTCAAGCAGCATACGATCTCGGAGCATCCCGTGTGCGATGTCAAAGCGAATGCCATGAGAAATTGTAAAGGCGAACGTATAACTATAAAGATAGACGTCACGTCGTTGGCATGCAAACTTTGCTGCGTGGCGGTTGATAACATCGAAGATCTAGTTGACCATTTGATTAAAAAACACACGGCCAACTATGACAAGTCTATCACGGGTTGTTTCGAACCGTACCGTGTCATGAAAGACAACATGCCCTGTCCCATCTGTCCAGATCTAGTGTTTAGATATTTCAACATACTACTCAGGCACATGAACTCCGTTCACAACAATAACAATAGAATATGCGACCATTGCGGTAGAAGTTTCAAGAGCGTGACCAATTTGAAAGTTCACATAGCTCACACGCACATGGCTTCCAGCGAATGCGACCTATGTGGGGGTAAATTTAAGAATCAATGGTGTCTCTTACGTCACAAGGCGAGCACGCACGACGTGAAAAGCTATAAATGCTCGAAGTGTCCAGAGAAGTTTCTCTCCCAATACCACAAACAGAAGCATTTGATCGAAGTGCACAATATAGGCCACAAGTGCAGTTACTGTAGCAAAATGTTCACCAGAAACTCGTTCATGAAAGACCACATACGGAGGTCGCATTTGAAGGAGAAAAACGTCACTTGCGGGATATGCAACGAGAAATTCTTTGACAATTATTTGTTGAAGTTGCACATGGTTAAACATTACGACGACAGGAGGTTTAAATGCGACGTGTGCGCAAAGGAGTTTCTGCGACGCAGTAATTTGGATTCACACAAAAAATTGCATAAAAAATATGGACATATTGCTGCGCAAACGTAA
- Protein Sequence
- MDARKSLQKSVSFSDENDHASGYEKRRTNLEILFNYTTLIPFKWRSKYLCFHCCTDVEYRDLRDHTKSHGHCTSNDKAIRDVKGKDVEVKIDVSHIACEICNEPFENFDEIIDHLIVKHKLPYNKNAELTLQPYRLVDLKCLLCDEHFNFFSKLIVHVNNKHPKHEFRCDFCKHTFNKKRDLAAHCRMYHKEDGYNCKECLLNFTSVNSLRSHNTSVHPSMCNICFNSYPTVRNKLRHIKLDHNGQCPVKCGFCLKLFSTNKSFIKHAESCTKELSKDVDDVGKTQIKQIRNNLACLLNMSTVIPFKNFLNRFRCFYCPKDFTECSELKEHTVLEHPHCDIKLKSMKLRNRARHEGVKVDVSFLSCKVCCESFDELDLLIDHLIVEHNARYNKAVDLSLLPYKLIKDNYPCPYCSEVFRYFSTLLRHVGLSHTDNRNLCVYCGKSFRTDASLRVHIASYHKTKRIKCPNCSIRFTTNNALHSHLGKAHGKKIFRCSKCSEKFVSDYAKLKHLIVIHGSGHKCEYCGKLFTKKSFMVNHVRRTHLKEKNVECSVCHERFFDVHLLKMHMVKHMGVRNFHCDICGKKFLWKKNLRDAYEGTYERTAERRRKNLQILFNNTSIIPFKWRGRYLCFYCGENHTKYIDFRKHTLSHGPCSTKDYSLKVIKGNHIEIKVDVSDITCNVCTEPFNSFKEIIDHLIIKHSLEYDSNVDTPFQEYRLVDFRCLLCDKQFSYFGYLVQHVNNSHPNNCFVCHDCKATFNKKRDLSVHMRNFHRQGGYKCELCMKIFKSLFTLRKHQKNMHFSFCNFCGLSFSSNSLLRKHTQMDHPDDGSFKCNHCAKTCHSSQGLKQHFKKCKAKLASIEPMKNPFTEECVEPKKKQDLQQIRLNIQCVLNMSTAIPFKFFSSFACFYCCKKFAEFEELKQHTISEHPVCDVKANAMRNCKGERITIKIDVTSLACKLCCVAVDNIEDLVDHLIKKHTANYDKSITGCFEPYRVMKDNMPCPICPDLVFRYFNILLRHMNSVHNNNNRICDHCGRSFKSVTNLKVHIAHTHMASSECDLCGGKFKNQWCLLRHKASTHDVKSYKCSKCPEKFLSQYHKQKHLIEVHNIGHKCSYCSKMFTRNSFMKDHIRRSHLKEKNVTCGICNEKFFDNYLLKLHMVKHYDDRRFKCDVCAKEFLRRSNLDSHKKLHKKYGHIAAQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388755;
- 90% Identity
- iTF_01388755;
- 80% Identity
- -