Stip003658.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4518131-4520668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2e-05 0.0012 19.5 3.9 2 23 167 188 166 188 0.98 2 11 0.00033 0.019 15.7 1.3 1 23 191 213 191 213 0.97 3 11 4.4e-05 0.0026 18.4 1.1 1 23 219 241 219 241 0.99 4 11 0.0014 0.084 13.6 2.4 5 23 265 284 263 284 0.92 5 11 3e-06 0.00017 22.1 0.8 2 23 290 312 290 312 0.94 6 11 2.7e-06 0.00016 22.2 3.1 1 23 320 343 320 343 0.98 7 11 7.2e-05 0.0042 17.7 2.2 2 23 350 372 349 372 0.94 8 11 0.0026 0.15 12.8 2.1 2 23 379 401 378 401 0.92 9 11 4e-06 0.00023 21.7 1.0 2 23 407 429 407 429 0.93 10 11 1.2e-06 6.8e-05 23.4 2.2 1 23 437 460 437 460 0.96 11 11 3.4e-06 0.0002 21.9 1.2 2 23 467 489 466 489 0.92
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGCGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCGATAAAGAAGGACCGTTGATTAAAGTTGAAAATGAAGAGACTACCACTCCCAATGACGAAGACAGTCACTCAGATTTAAATGTGGCTTTGGATGAAGTATCCAATCAAGATGGCAAAGTTGAAGAAAGCAAAAACGAATTAGATGAAACCTTCAGTAAATCTGAGAACGACAGACAGGAGAATAAATGCAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACACGAAGACACACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGACACATGCTGAGATAAAAGAGCACGATATTTGCAAGAAAACATTTAAACATAAAAATAGTTTAAGCAGCCACATGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTATACATTTAGGCCCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATTTAAACAGAGTTTAAGCACCCACATGTCGACTGTACATTCGAACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAAATCCAAGGAGACTATACACAAGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTCGGCTGTACATTTGGGCTCTGAGTTAAGGCGCTTTAAATGTGACATTTGCAAAAAGACATTTCAATACAAAGACAATTTAAGGAGCCACATGTCGAATGTACATTCGGACCTTCCACCAACTCAGTGCGACATTTGTAAGAAGACATTTAAACAAAAAAACAATTTAAGCAGGCACGTGTCGGCTGTACATTTAGGCTTGAAGTGA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHVTFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKCWSYACSDKEGPLIKVENEETTTPNDEDSHSDLNVALDEVSNQDGKVEESKNELDETFSKSENDRQENKCNICNRTFRFKKYLESHTKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLTHAEIKEHDICKKTFKHKNSLSSHMLAVHLGSEEVCNICKKTFKYKQGLRRHMLAIHLGPELRPFKCDICKKTFKFKQSLSTHMSTVHSNLPPTQCDICKKTFKSKETIHKHMLAVHSDLPPTQCDICMKTFKHKNSLSSHTLAVHLGSEEVCNICKKTFKYKQGLRRHMSAVHLGSELRRFKCDICKKTFQYKDNLRSHMSNVHSDLPPTQCDICKKTFKQKNNLSRHVSAVHLGLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388706;
- 90% Identity
- iTF_01388706;
- 80% Identity
- iTF_01388706;