Stip003658.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4518131-4520668[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6 1.8e+03 -0.7 1.0 19 25 11 17 7 22 0.91 2 12 0.0056 2.8 8.3 0.8 7 26 156 175 156 178 0.89 3 12 0.015 7.5 6.9 2.5 3 30 177 204 175 210 0.89 4 12 0.08 40 4.6 1.3 12 41 214 240 206 247 0.78 5 12 0.8 4e+02 1.4 1.4 21 39 265 285 264 288 0.75 6 12 0.00038 0.19 12.0 2.2 18 39 290 308 287 312 0.91 7 12 0.0064 3.2 8.1 0.2 18 44 321 344 319 344 0.88 8 12 0.077 39 4.6 1.5 18 32 350 364 349 373 0.80 9 12 0.0027 1.4 9.3 2.8 17 39 378 402 364 405 0.83 10 12 4.1e-05 0.021 15.1 1.0 18 43 407 429 406 430 0.93 11 12 0.00021 0.11 12.8 0.7 17 44 437 461 432 461 0.91 12 12 0.00068 0.34 11.2 0.3 18 43 467 489 465 490 0.90
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGCGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCGATAAAGAAGGACCGTTGATTAAAGTTGAAAATGAAGAGACTACCACTCCCAATGACGAAGACAGTCACTCAGATTTAAATGTGGCTTTGGATGAAGTATCCAATCAAGATGGCAAAGTTGAAGAAAGCAAAAACGAATTAGATGAAACCTTCAGTAAATCTGAGAACGACAGACAGGAGAATAAATGCAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACACGAAGACACACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGACACATGCTGAGATAAAAGAGCACGATATTTGCAAGAAAACATTTAAACATAAAAATAGTTTAAGCAGCCACATGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTATACATTTAGGCCCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATTTAAACAGAGTTTAAGCACCCACATGTCGACTGTACATTCGAACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAAATCCAAGGAGACTATACACAAGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTCGGCTGTACATTTGGGCTCTGAGTTAAGGCGCTTTAAATGTGACATTTGCAAAAAGACATTTCAATACAAAGACAATTTAAGGAGCCACATGTCGAATGTACATTCGGACCTTCCACCAACTCAGTGCGACATTTGTAAGAAGACATTTAAACAAAAAAACAATTTAAGCAGGCACGTGTCGGCTGTACATTTAGGCTTGAAGTGA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHVTFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKCWSYACSDKEGPLIKVENEETTTPNDEDSHSDLNVALDEVSNQDGKVEESKNELDETFSKSENDRQENKCNICNRTFRFKKYLESHTKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLTHAEIKEHDICKKTFKHKNSLSSHMLAVHLGSEEVCNICKKTFKYKQGLRRHMLAIHLGPELRPFKCDICKKTFKFKQSLSTHMSTVHSNLPPTQCDICKKTFKSKETIHKHMLAVHSDLPPTQCDICMKTFKHKNSLSSHTLAVHLGSEEVCNICKKTFKYKQGLRRHMSAVHLGSELRRFKCDICKKTFQYKDNLRSHMSNVHSDLPPTQCDICKKTFKQKNNLSRHVSAVHLGLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388750;
- 90% Identity
- iTF_01388750;
- 80% Identity
- iTF_01388750;