Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392436.1:769415-780538[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.022 1.3 9.9 0.0 1 23 117 139 117 139 0.97

2 16 0.0019 0.11 13.3 3.5 1 23 231 253 231 253 0.99

3 16 2.4e-05 0.0014 19.2 0.3 1 23 259 282 259 282 0.97

4 16 0.012 0.69 10.8 8.7 1 23 287 310 287 310 0.93

5 16 0.0025 0.15 12.9 5.2 1 23 461 483 461 483 0.98

6 16 3e-05 0.0017 18.9 0.4 2 23 579 600 578 600 0.97

7 16 8.5e-07 5e-05 23.8 0.3 1 23 606 628 606 628 0.98

8 16 0.0083 0.48 11.2 5.0 1 23 684 706 684 706 0.98

9 16 4.8 2.8e+02 2.5 0.1 2 23 714 735 713 735 0.87

10 16 0.00025 0.014 16.0 2.6 1 23 741 763 741 763 0.98

11 16 0.0021 0.12 13.1 2.3 1 23 769 791 769 791 0.97

12 16 0.022 1.3 9.9 5.2 1 23 800 822 800 822 0.98

13 16 0.00037 0.022 15.5 0.4 2 23 868 889 868 889 0.96

14 16 0.0059 0.35 11.7 3.0 1 23 906 928 906 928 0.97

15 16 1.2e-05 0.00069 20.2 1.2 1 23 934 956 934 956 0.97

16 16 3.3e-07 1.9e-05 25.1 2.5 1 23 962 985 962 985 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.022	1.3	9.9	0.0	1	23	117	139	117	139	0.97
2	16	0.0019	0.11	13.3	3.5	1	23	231	253	231	253	0.99
3	16	2.4e-05	0.0014	19.2	0.3	1	23	259	282	259	282	0.97
4	16	0.012	0.69	10.8	8.7	1	23	287	310	287	310	0.93
5	16	0.0025	0.15	12.9	5.2	1	23	461	483	461	483	0.98
6	16	3e-05	0.0017	18.9	0.4	2	23	579	600	578	600	0.97
7	16	8.5e-07	5e-05	23.8	0.3	1	23	606	628	606	628	0.98
8	16	0.0083	0.48	11.2	5.0	1	23	684	706	684	706	0.98
9	16	4.8	2.8e+02	2.5	0.1	2	23	714	735	713	735	0.87
10	16	0.00025	0.014	16.0	2.6	1	23	741	763	741	763	0.98
11	16	0.0021	0.12	13.1	2.3	1	23	769	791	769	791	0.97
12	16	0.022	1.3	9.9	5.2	1	23	800	822	800	822	0.98
13	16	0.00037	0.022	15.5	0.4	2	23	868	889	868	889	0.96
14	16	0.0059	0.35	11.7	3.0	1	23	906	928	906	928	0.97
15	16	1.2e-05	0.00069	20.2	1.2	1	23	934	956	934	956	0.97
16	16	3.3e-07	1.9e-05	25.1	2.5	1	23	962	985	962	985	0.98

Sequence Information

Coding Sequence: ATGGAAGGTGACCCCTTGAGCACATACACATATGACTATTCATATATCAATTATGAAAATGGACAAATGCAATTATCTGATAAAATAAATCTCGAACCGAAAACAAGTAATAATTCAAATGAAAGTATAAATGAAAGTCATAATCAAAATAACGGCTGTAGTCTAAGCAATAATAGTGTTGATAATGAGCTAAAAAATAATAAAGACACACCTAATAATAATAATAATAATAGTAATTCTGCACCGTCTGTCAGTAAGACTAGTTTAAATAAAAGAGTAAAAACAAAAGTAAAAAAGGAAAGAAGTAATTACTGGTCGGAGAAAATAACTCAAGAAGGATTCCCTTTTTACGCGTGCGCCATTTGCAATATAAATTTTCCATTATTGAGCGAGTTGGACCAACACGTGACCACGCATAAAGGTCGACCGACGAGTTACGATTTGAGAGTGAAAAGTAAAAAGAGGAGAAAAGTGAGAGAAAAAGAAAGAAAGAGATATTTGAAAATGTGCAAAAAAGGTGGCATTAAGAAGGAAAATGATTTAGAAATCAAACCCGAAGAAGGCTACATAGGAAATGTGAAGGCTAATGATTATAATTCGAAAGAAAGTGAAGAAATTTTTGATAATAATATAAAAAATGAGAAGAAAGAAGTAAAACAGAGCTCGGAGGAAGTTAACTTGGAGAAGATTTTTAAGTGTCACGCTTGTCAGAAGCAGTTTGCGTTAAGTTATTACTTGAAGTTGCATGTTAGGTCTCATACGGATGAAAAGCCCTACACATGTAATATATGCGGACTGTCGTTCATAACGGCAAGCAAACTGGGGCGTCACAATAAGCGTATCCATTTGGCCATTAGACATCAGTGTAGGATATGTTTTAAGAAATTTTGTAGATTTGACAATTTGAAACGTCACTTTGACAAGTCGCACTCGGAACAAATACTGGAGGGGGAGCCTTACGATTACAATGTGATATTGCCGTATTTAAAAGAGTTAGAAGATGAATTAATTAATAAAGAAGTGAATAAGAGTACGGAGGATGAAAAAAACAATTACGAAGACACAGCCTCCACCGGTGTCTTAGAAAAGGATGAAAAGAATCAGAATACCAAAGATTTTCCACAGGTCCAAGAAACGGTAAAAGTGGAAGTAAAAGACGAAGACCTAAATGGGTTTGGCCTAAAAGAAGAAGAAACAGTCGGACAGGATCCGACGGATCCTGTCATGACGGATCCTGACGGAAACGACACGGACAGCGTACGGGATGAGAACGACGATTGCTCTGTCAAGGATGAGAAACGAAAGAGAAAGAAGTCCAAACATTCGGTCAAAAATAAAAGTACGCCAATAAAACAGAAGAGGCCCTACAGGAAGAGGCCTTTCTCCTGCGAACACTGCCAGAAGAAGTTCCTCCACAAGGACACGTTGGAAGTGCACCAGATGAGTCATCAGGTCCAAGAAACGGTAAAAGTGGAAGTAAAAGACGAAGACCTGAATGGGTTTGCCCTAAAAGAAGAAGAAACGGACGGACAGGATCCCACCAAGGATGAAACATCACATCCAAACGAGACGGACAGCGTACGGGATGAGAACGACGACTGCTCTGTCAAGGATGAGaaCTCGTCGGATTCGGATTACTTCCCGGCGTTCACGTGGGCCGTCGCGCCGTCCCCACCGTCGACCCCGTGCGACCCCCCAGCGGAGGGCGAGTCGCCCCCCGCGTCCGCGCGGCTGTCGTGCGGGACGTGCGGCAAGCGGATCAGCTCGCCGTCGTACATGCGCGTCCACATGCGCACGCACACGGGCGAGAGGCCGTTCGAGTGCGGCGTGTGTGGACGCGCCTTTATAACTAGCAGCAAGATGAACAGGCACATGTTGACACACAGATCGGACGCTGATATCAAAGACGATTCAGAAAAGATGGAAGTGAAGTCCGAAGACGAAGAAGTCAACGAAACTGAAAAACGAAAGAGAAAGAAATCCAAGCATTCGGTGAATAAAAGTAAAAGTGCGCCAATAAAACAGAAGAGGCCCTACAGGAAAAGGCCTTTCTCGTGCGTACACTGCCAGAAGAAGTTCCTCCACAAGGACACGTTGGAAGTGCACCAGATGAGTCATCAGGGTGAGGAGAAGACCCTCAAGTGCCAATATTGTCTGGAGGTATACCAGAGCGAGGATATTTTGAAGGCTCACGAGGCGGAACACGAGGGGCCAAAGCCTTACATGTGCACTCTATGTGGGAAAACATACAAGAGAAGGGAAACTATGATATATCACCGCAAGAACCACAAGGCGTCGCGCACTCACCAGTGCGACGTGTGCACGAAGTCGTTCAGCGCGGCGTGCAAACTGGCCAGACACGCACTGTCGCACAGGACGGTGCGCTTCTCACAGCAGTTCGAGTGTCCCGTGTGCGCTCACATGTTCCACACCAAGTATCACGTGCAGATGCATCTCAGCACACACCTCAAGGAGGGAATCATCATAGAGGAGAACTTGAACGAGATCCTCGCGATGGTCTTACAAAACGCTCGAAGGATCCCCAAGGACGACAAGTCGCCTCTCCCGACTTTGCCCGCTCCACAGGATGAGATGTCGCGCGTCTGCAACATATGTGGAGAGGTGTTCCAACACTTCTACTACCTGGAGGAACATCTGAAAGGCCACGGAACCAAATTCGCAGTGGAAAACTTCGATAAGGAGGAAGAGAAGAAATATATATGCGAAGTTTGCAATAAAGGCTTCAAATTGCATTACTACCTAAAATTGCACAGCTACACACACACGAAACAGAAGCCTTTCATATGCCAACAGTGCGGCAAAGGCTTCATAACTAAGGGAAAACTCAAAAGACACTTTGAAACGCACAGCGGACTCAAAAAGTACCAATGTCACATATGTTTGAAGTTTTTCACTAGGCCCAGTTACTTGAGAATACACATTAGGACGATTCACGGTGCGAACACAACGATCATGTTGGGTTTTCAGAGGATTTAG
Protein Sequence: MEGDPLSTYTYDYSYINYENGQMQLSDKINLEPKTSNNSNESINESHNQNNGCSLSNNSVDNELKNNKDTPNNNNNNSNSAPSVSKTSLNKRVKTKVKKERSNYWSEKITQEGFPFYACAICNINFPLLSELDQHVTTHKGRPTSYDLRVKSKKRRKVREKERKRYLKMCKKGGIKKENDLEIKPEEGYIGNVKANDYNSKESEEIFDNNIKNEKKEVKQSSEEVNLEKIFKCHACQKQFALSYYLKLHVRSHTDEKPYTCNICGLSFITASKLGRHNKRIHLAIRHQCRICFKKFCRFDNLKRHFDKSHSEQILEGEPYDYNVILPYLKELEDELINKEVNKSTEDEKNNYEDTASTGVLEKDEKNQNTKDFPQVQETVKVEVKDEDLNGFGLKEEETVGQDPTDPVMTDPDGNDTDSVRDENDDCSVKDEKRKRKKSKHSVKNKSTPIKQKRPYRKRPFSCEHCQKKFLHKDTLEVHQMSHQVQETVKVEVKDEDLNGFALKEEETDGQDPTKDETSHPNETDSVRDENDDCSVKDENSSDSDYFPAFTWAVAPSPPSTPCDPPAEGESPPASARLSCGTCGKRISSPSYMRVHMRTHTGERPFECGVCGRAFITSSKMNRHMLTHRSDADIKDDSEKMEVKSEDEEVNETEKRKRKKSKHSVNKSKSAPIKQKRPYRKRPFSCVHCQKKFLHKDTLEVHQMSHQGEEKTLKCQYCLEVYQSEDILKAHEAEHEGPKPYMCTLCGKTYKRRETMIYHRKNHKASRTHQCDVCTKSFSAACKLARHALSHRTVRFSQQFECPVCAHMFHTKYHVQMHLSTHLKEGIIIEENLNEILAMVLQNARRIPKDDKSPLPTLPAPQDEMSRVCNICGEVFQHFYYLEEHLKGHGTKFAVENFDKEEEKKYICEVCNKGFKLHYYLKLHSYTHTKQKPFICQQCGKGFITKGKLKRHFETHSGLKKYQCHICLKFFTRPSYLRIHIRTIHGANTTIMLGFQRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386042;
90% Identity: -
80% Identity: -