Sand002577.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000134.1:356387-369518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.02 1.2 10.1 0.0 1 23 123 145 123 145 0.97 2 15 0.0017 0.1 13.5 3.5 1 23 237 259 237 259 0.99 3 15 3.9e-05 0.0024 18.6 0.3 1 23 265 288 265 288 0.97 4 15 0.023 1.4 9.9 8.6 1 23 293 316 293 316 0.93 5 15 3.1e-05 0.0019 18.9 0.4 2 23 479 500 478 500 0.97 6 15 7.7e-07 4.8e-05 24.0 0.3 1 23 506 528 506 528 0.98 7 15 0.0016 0.097 13.5 5.0 1 23 583 605 583 605 0.98 8 15 0.035 2.2 9.3 0.3 2 23 613 634 612 634 0.95 9 15 0.00015 0.0091 16.8 2.7 1 23 640 662 640 662 0.98 10 15 0.0019 0.12 13.3 2.3 1 23 668 690 668 690 0.97 11 15 0.0019 0.12 13.2 5.6 1 23 699 721 699 721 0.98 12 15 0.00034 0.021 15.6 0.4 2 23 767 788 767 788 0.96 13 15 0.0053 0.33 11.9 3.0 1 23 805 827 805 827 0.97 14 15 1.1e-05 0.00066 20.4 1.2 1 23 833 855 833 855 0.97 15 15 3e-07 1.9e-05 25.2 2.5 1 23 861 884 861 884 0.98
Sequence Information
- Coding Sequence
- ATGGAAGGGGACCCGTTGAGCACATACACATATGACTTTTCATATATCAATTATGAGAACGGCCAAATGCAGTTATCTGATAAAATAGATCTCGAACCAAAAACACAAAACGGAAGTAACGATTCAAATGAAATTATAAATGAAAGCGATTGTCTAAATGAAAGTCATAATATAAATAACAGTTATAGTCTAAGCAATAATAGTGTTGATAATGAGCTAAAAAATAATAAAGACACAGCCAATAATAATAGTAATTCCATTCCGTCTGTCAGTAAGACTAGTTTAAATAAAAGAGTAAAAACAAAAGTAAAAAAAGAAAGAAGTAATTACTGGTCGGAGAAAATAACACAAGAGGGATTTCCTTTTTATGCATGTGCTATTTGCAATATAAATTTTCCATTGTTGAGCGAGTTGGATCAACACGTGACCACGCATAAGGGTCGACCGACAAGTTACGATTTGAGAGTGAAAAGTAAAAAGAGGAGAAAAGTAAGAGAAAAAGAGAGAAAGAGATATTTGAAAATGTGCAAAAAAGATGGAGTTAAGAAGGAAATTGATTTAGAAATCAAACCTGAAGAAGGCTACATAGGAAATGAGAAGGCTAACGAGTATAATTCGAAAGAAAGTGCAAAAGTTTTGAAAAATAATATCAAAAATGAGAAGAAAGAAGTGAAACAGACATCGGAGGAAGTTAACTTGGAGAAGATTTTCAAGTGTCACGCTTGTCAGAAGCAGTTTGCGTTAAGTTATTACTTGAAGTTGCATGTTAGATCTCATACGGATGAAAAACCCTACACGTGTAACGTATGCGGACTGTCTTTCATAACAGCAAGCAAATTGGGGCGTCACAATAAACGGATTCATTTGGCCATTAGACATCAATGTAGGATATGTTTTAGGAAATTTTGTAGATTTGACAATTTGAAACGTCACTTTGACAAGTCGCACGCGGAACAAATACTGGAGGGGGAGCCCTACGATTACAATGTGATATTGCCGTATTTAAAAGAGTTAGAAGATGAATTGAATAATAAAGAAGTCAATAAGAGTACTGAGGATGAAAAAACAAATTTCGAAGACACAGCCTCCACCGGTGTCTCAGAAAAGGATGAAAGGGACCAGGATACCAAAGATTTTCCACAGGATGAGGTCAAAGAAACACAGGTAAAGGTGGAAGTGAAAGATGAAGACCTAAATGGGTTTTCTTTAAAAGAAGAAGAAACCTCGGTCGGACAGGATCCGACCAGGGATGAAACATCACATCCAAACGAGACGGACAGCGTTCGGGATGAGAACGAAGACTGCTCTGTCAAAGATGAAAACTCGTCGGATTCGGATTACTTCCCGGCGTTCACGTGGGCCGTCGCCCCGTCCCCGCCGTCGACCCCCTCCGCCCCCCCGGCGGAGGGCGAGTCCCCCGCCTCCCCGCCGCTGTCGTGCGGCACGTGCGGCAAGCGGATCAGCTCGCCGTCGTACATGCGCATACACATGCGCACGCACACTGGCGAGCGGCCGTTCGAGTGTGGCGTGTGTGGACGCGCCTTTATAACGAGCAGCAAGATGAACAGGCACATGTTGACTCACAGATCGGACGGTGATATCAAAGAGCATTCGGAAAAGATGGAAGTGAAGTCTGAAAACGAAGAAGTGAACAAAACTGAAAAACGAAAGAGAAAGAAGTCCAAACATTCAGTCAAAAATAAAACGACCCAAATCAAAGAGAAGAGGCCGTACAAGAAGAGGCCATACTCATGCGAACACTGCCAGAAGAAGTTCCTCCACAAGGACACGTTGGAAgtgcaccagatgagtcatcagGGTGAGGAGAAGACCCTCAAATGCCAATACTGCCTGGAGGTATACCAGAGCGAGGATACTTTGAAGACTCACGAGATGGAACATGAGGGGCCAAAGCCTTACATGTGCACTCTATGTGGAAAAACATACAAGAGGAAGGAGACTATGATATATCACCGCAAGAACCACAAGGCGTCGCGCACTCACCAGTGCGACGTGTGCACGAAGTCGTTCAGCGCGGCGTGCAAACTGGCGAGACACGCTCTGTCACACAGGACGGCGCGCTTCTCGCAGCAGTTCGAGTGTCCCGTGTGCGCTCACATGTTCCACACAAAGTATCACCTGCAGATGCATCTCAGCACTCACCTCAAGGAGGGAATCATCATAGAGGAGAACTTGAACGAGATTCTCGCGATGGTATTACAAAACGCTCGAAGGATCCCCAAAAACGACAAGTCTCCTCTCCCGACTTTGCCCGCCCCACAGGATGAGATGTCGCGCGTCTGCAACATATGTGGAGAGGTGTTCCAACACTTTTACTACCTGGAGGAACATCTGAAAGGTCACGGAACCAGATTCGCTGTCGAAAACTTAGATAAGGAGGAGGAAAAGAAGTATATATGCGAAGTTTGCAATAAAGGCTTCAAATTGCACTACTACCTGAAACTGCACAGCTACACGCACACGAAACAGAAGCCGTTCATATGCCAACAGTGCGGCAAGGGGTTCATAACGAAGGGGAAACTGAAAAGGCACTTTGAGACTCACAGCGGACTCAAAAAGTACCAGTGTCACATTTGTTTGAAGTTTTTCACAAGGCCCAGTTACTTGAGGATACACATTAGGACAATTCACGGAGCGAACACAACGATTATGTTGGGTTTTCAGAGGATCTAG
- Protein Sequence
- MEGDPLSTYTYDFSYINYENGQMQLSDKIDLEPKTQNGSNDSNEIINESDCLNESHNINNSYSLSNNSVDNELKNNKDTANNNSNSIPSVSKTSLNKRVKTKVKKERSNYWSEKITQEGFPFYACAICNINFPLLSELDQHVTTHKGRPTSYDLRVKSKKRRKVREKERKRYLKMCKKDGVKKEIDLEIKPEEGYIGNEKANEYNSKESAKVLKNNIKNEKKEVKQTSEEVNLEKIFKCHACQKQFALSYYLKLHVRSHTDEKPYTCNVCGLSFITASKLGRHNKRIHLAIRHQCRICFRKFCRFDNLKRHFDKSHAEQILEGEPYDYNVILPYLKELEDELNNKEVNKSTEDEKTNFEDTASTGVSEKDERDQDTKDFPQDEVKETQVKVEVKDEDLNGFSLKEEETSVGQDPTRDETSHPNETDSVRDENEDCSVKDENSSDSDYFPAFTWAVAPSPPSTPSAPPAEGESPASPPLSCGTCGKRISSPSYMRIHMRTHTGERPFECGVCGRAFITSSKMNRHMLTHRSDGDIKEHSEKMEVKSENEEVNKTEKRKRKKSKHSVKNKTTQIKEKRPYKKRPYSCEHCQKKFLHKDTLEVHQMSHQGEEKTLKCQYCLEVYQSEDTLKTHEMEHEGPKPYMCTLCGKTYKRKETMIYHRKNHKASRTHQCDVCTKSFSAACKLARHALSHRTARFSQQFECPVCAHMFHTKYHLQMHLSTHLKEGIIIEENLNEILAMVLQNARRIPKNDKSPLPTLPAPQDEMSRVCNICGEVFQHFYYLEEHLKGHGTRFAVENLDKEEEKKYICEVCNKGFKLHYYLKLHSYTHTKQKPFICQQCGKGFITKGKLKRHFETHSGLKKYQCHICLKFFTRPSYLRIHIRTIHGANTTIMLGFQRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387812; iTF_01388746;
- 90% Identity
- iTF_01387812;
- 80% Identity
- -