Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:4465305-4468205[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1e-05 0.00063 20.3 3.0 2 23 144 165 143 165 0.98

2 15 0.00064 0.037 14.7 1.1 1 23 168 190 168 190 0.96

3 15 3.3e-05 0.0019 18.8 1.1 1 23 196 217 196 217 0.99

4 15 0.002 0.11 13.2 0.5 5 23 233 252 232 252 0.92

5 15 9.8e-05 0.0057 17.3 3.5 2 23 259 281 258 281 0.97

6 15 2.6e-05 0.0015 19.1 2.3 2 23 288 310 287 310 0.97

7 15 3.2e-06 0.00019 22.0 1.0 2 23 317 339 316 339 0.94

8 15 1e-05 0.00058 20.4 2.6 2 23 346 368 345 368 0.95

9 15 4.3e-07 2.5e-05 24.7 1.5 2 23 375 397 374 397 0.94

10 15 0.0029 0.17 12.7 1.1 2 23 404 426 403 426 0.94

11 15 0.0018 0.1 13.3 1.2 2 23 433 455 432 455 0.92

12 15 1.8e-06 0.00011 22.7 2.9 2 23 461 483 461 483 0.97

13 15 3.6e-06 0.00021 21.8 0.8 2 23 489 511 489 511 0.94

14 15 2.7e-06 0.00015 22.2 1.3 1 23 519 542 519 542 0.95

15 15 5.5e-06 0.00032 21.2 1.9 2 23 548 570 548 570 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1e-05	0.00063	20.3	3.0	2	23	144	165	143	165	0.98
2	15	0.00064	0.037	14.7	1.1	1	23	168	190	168	190	0.96
3	15	3.3e-05	0.0019	18.8	1.1	1	23	196	217	196	217	0.99
4	15	0.002	0.11	13.2	0.5	5	23	233	252	232	252	0.92
5	15	9.8e-05	0.0057	17.3	3.5	2	23	259	281	258	281	0.97
6	15	2.6e-05	0.0015	19.1	2.3	2	23	288	310	287	310	0.97
7	15	3.2e-06	0.00019	22.0	1.0	2	23	317	339	316	339	0.94
8	15	1e-05	0.00058	20.4	2.6	2	23	346	368	345	368	0.95
9	15	4.3e-07	2.5e-05	24.7	1.5	2	23	375	397	374	397	0.94
10	15	0.0029	0.17	12.7	1.1	2	23	404	426	403	426	0.94
11	15	0.0018	0.1	13.3	1.2	2	23	433	455	432	455	0.92
12	15	1.8e-06	0.00011	22.7	2.9	2	23	461	483	461	483	0.97
13	15	3.6e-06	0.00021	21.8	0.8	2	23	489	511	489	511	0.94
14	15	2.7e-06	0.00015	22.2	1.3	1	23	519	542	519	542	0.95
15	15	5.5e-06	0.00032	21.2	1.9	2	23	548	570	548	570	0.94

Sequence Information

Coding Sequence: ATGGCTGCAACATTAAACCAAACATCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCGACGGACTTGAAGATTGCCTGTGGGAAAATTATTAAACAAGGACCGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGACAATCACTCGGATATAAATGTGGCTTTAGATGAAGTATCCAATCAAGATGACAGAATTGAAGAGAGCAGAAACGAATTAAATGAAACCCTCAAGAATGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAGACACGAAATGGCGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACATTGAGCAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCACGAGCCTGCTGAGATAAAAGAGCGCGACATTTGCAAAAAGACATTTAAATACAAGAAGAATATACGCACCCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCATGAAGACATTTAAATATAAACACAGTTTTAACAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAACATGAAAATGGTTTAAGCACCCACATGTCGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACACTTTGACCTTCCACCCACTCAGTGCAAAATTTGTAGGAAGACATTTAAATACAAATACAATTTAAGCAAGCACACGTCTGTTGTACATTCGGACCTTCCACCCACTCAGTGCAACATCTGCAAGAAGACATTTAAATACAAAGATAATTTACGCAACCACATGTCAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACATGAAAATGGTTTAAGCACCCACATGTCAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATATAAAAATAGTTTAAGGAGCCACAAGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACACAAGCACATGTTGACTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACACAAGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCCGTGCGACATTTGCAAATAG
Protein Sequence: MAATLNQTSLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQGPLIKVDVKVEREETPTPNDEDNHSDINVALDEVSNQDDRIEESRNELNETLKNDRHENKCNICNKTFMFRKYLESHMKTHFKHRCEVCNRDYQSKGELRRHEMAHKDERKFKCSICNNGFTLSSLKAHMKTHKDRTPHEPAEIKERDICKKTFKYKKNIRTHMSAVHSDLPPIQCDICMKTFKYKHSFNRHMSTVHSDLPPTQCDICKKTFKHENGLSTHMSTVHSDLPPTQCDICKKTFKSKENIRKHMLAVHFDLPPTQCKICRKTFKYKYNLSKHTSVVHSDLPPTQCNICKKTFKYKDNLRNHMSAVHSDLPPTQCDICMKTFKHENGLSTHMSAVHSDLPPTQCDICMKTFKYKNSLRSHKLAVHLGSEEVCNICKKTFKYKSGLHKHMLTVHLGSEEVCNICKKTFKYKQGLRRHMLAVHLGSELRPFKCDICKKTFKYKLGLRRHMLAVHLGSEEVCNICKKTFKYKSGLHKHMLAVHSDLPPTPCDICK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388688;
90% Identity: iTF_01388688;
80% Identity: iTF_01388688;