Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:4465305-4468205[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.7 2.9e+03 -1.3 1.5 19 25 11 17 6 21 0.89

2 16 0.17 86 3.5 7.2 13 43 139 170 134 171 0.80

3 16 0.17 86 3.5 1.9 6 30 157 181 154 188 0.80

4 16 0.042 21 5.5 1.9 12 41 191 216 183 223 0.81

5 16 0.054 27 5.1 0.4 21 44 233 253 232 253 0.91

6 16 0.00012 0.06 13.6 0.2 17 44 258 282 254 282 0.91

7 16 0.0013 0.64 10.4 0.6 18 44 288 311 286 311 0.93

8 16 0.02 10 6.5 1.1 18 40 317 336 315 340 0.83

9 16 0.0089 4.5 7.7 2.5 10 38 343 363 336 369 0.75

10 16 2.8e-05 0.014 15.7 0.3 18 44 375 398 371 398 0.93

11 16 0.0027 1.3 9.3 0.4 18 44 404 427 402 427 0.90

12 16 0.0038 1.9 8.8 0.8 18 39 433 456 431 459 0.83

13 16 0.00078 0.39 11.0 3.8 18 43 461 483 458 484 0.94

14 16 0.00011 0.053 13.8 0.9 18 43 489 511 488 512 0.90

15 16 0.0016 0.82 10.0 0.3 18 43 520 542 518 543 0.87

16 16 0.0003 0.15 12.3 1.4 18 43 548 570 546 571 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.7	2.9e+03	-1.3	1.5	19	25	11	17	6	21	0.89
2	16	0.17	86	3.5	7.2	13	43	139	170	134	171	0.80
3	16	0.17	86	3.5	1.9	6	30	157	181	154	188	0.80
4	16	0.042	21	5.5	1.9	12	41	191	216	183	223	0.81
5	16	0.054	27	5.1	0.4	21	44	233	253	232	253	0.91
6	16	0.00012	0.06	13.6	0.2	17	44	258	282	254	282	0.91
7	16	0.0013	0.64	10.4	0.6	18	44	288	311	286	311	0.93
8	16	0.02	10	6.5	1.1	18	40	317	336	315	340	0.83
9	16	0.0089	4.5	7.7	2.5	10	38	343	363	336	369	0.75
10	16	2.8e-05	0.014	15.7	0.3	18	44	375	398	371	398	0.93
11	16	0.0027	1.3	9.3	0.4	18	44	404	427	402	427	0.90
12	16	0.0038	1.9	8.8	0.8	18	39	433	456	431	459	0.83
13	16	0.00078	0.39	11.0	3.8	18	43	461	483	458	484	0.94
14	16	0.00011	0.053	13.8	0.9	18	43	489	511	488	512	0.90
15	16	0.0016	0.82	10.0	0.3	18	43	520	542	518	543	0.87
16	16	0.0003	0.15	12.3	1.4	18	43	548	570	546	571	0.90

Sequence Information

Coding Sequence: ATGGCTGCAACATTAAACCAAACATCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCGACGGACTTGAAGATTGCCTGTGGGAAAATTATTAAACAAGGACCGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGACAATCACTCGGATATAAATGTGGCTTTAGATGAAGTATCCAATCAAGATGACAGAATTGAAGAGAGCAGAAACGAATTAAATGAAACCCTCAAGAATGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAGACACGAAATGGCGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACATTGAGCAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCACGAGCCTGCTGAGATAAAAGAGCGCGACATTTGCAAAAAGACATTTAAATACAAGAAGAATATACGCACCCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCATGAAGACATTTAAATATAAACACAGTTTTAACAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAACATGAAAATGGTTTAAGCACCCACATGTCGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACACTTTGACCTTCCACCCACTCAGTGCAAAATTTGTAGGAAGACATTTAAATACAAATACAATTTAAGCAAGCACACGTCTGTTGTACATTCGGACCTTCCACCCACTCAGTGCAACATCTGCAAGAAGACATTTAAATACAAAGATAATTTACGCAACCACATGTCAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACATGAAAATGGTTTAAGCACCCACATGTCAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATATAAAAATAGTTTAAGGAGCCACAAGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACACAAGCACATGTTGACTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACACAAGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCCGTGCGACATTTGCAAATAG
Protein Sequence: MAATLNQTSLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQGPLIKVDVKVEREETPTPNDEDNHSDINVALDEVSNQDDRIEESRNELNETLKNDRHENKCNICNKTFMFRKYLESHMKTHFKHRCEVCNRDYQSKGELRRHEMAHKDERKFKCSICNNGFTLSSLKAHMKTHKDRTPHEPAEIKERDICKKTFKYKKNIRTHMSAVHSDLPPIQCDICMKTFKYKHSFNRHMSTVHSDLPPTQCDICKKTFKHENGLSTHMSTVHSDLPPTQCDICKKTFKSKENIRKHMLAVHFDLPPTQCKICRKTFKYKYNLSKHTSVVHSDLPPTQCNICKKTFKYKDNLRNHMSAVHSDLPPTQCDICMKTFKHENGLSTHMSAVHSDLPPTQCDICMKTFKYKNSLRSHKLAVHLGSEEVCNICKKTFKYKSGLHKHMLTVHLGSEEVCNICKKTFKYKQGLRRHMLAVHLGSELRPFKCDICKKTFKYKLGLRRHMLAVHLGSEEVCNICKKTFKYKSGLHKHMLAVHSDLPPTPCDICK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388732;
90% Identity: iTF_01388732;
80% Identity: iTF_01388732;