Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392434.1:173629-178256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4e-07 1.4e-05 25.5 4.6 2 23 200 221 199 221 0.98

2 15 0.00031 0.018 15.7 4.0 1 23 229 252 229 252 0.89

3 15 0.002 0.12 13.2 0.2 1 23 258 280 258 280 0.98

4 15 1.9e-06 0.00011 22.7 2.2 1 23 286 309 286 309 0.95

5 15 6.7e-05 0.0039 17.8 5.1 1 23 315 337 315 337 0.98

6 15 4.6e-07 2.7e-05 24.6 2.5 1 23 343 365 343 365 0.98

7 15 4.5e-07 2.6e-05 24.7 0.9 1 23 371 394 371 394 0.95

8 15 0.0015 0.089 13.6 0.3 2 23 400 422 399 422 0.96

9 15 1.5e-07 8.5e-06 26.2 1.4 2 23 428 449 427 449 0.97

10 15 2.4e-05 0.0014 19.2 2.0 2 23 458 479 457 479 0.97

11 15 5.5e-07 3.2e-05 24.4 1.5 1 23 484 507 484 507 0.95

12 15 0.0037 0.21 12.4 0.4 1 23 512 535 512 535 0.94

13 15 0.00019 0.011 16.4 1.2 1 23 540 563 540 563 0.94

14 15 2.4e-05 0.0014 19.3 1.8 1 23 568 590 568 590 0.98

15 15 1.2e-06 6.9e-05 23.3 0.6 1 23 595 618 595 618 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4e-07	1.4e-05	25.5	4.6	2	23	200	221	199	221	0.98
2	15	0.00031	0.018	15.7	4.0	1	23	229	252	229	252	0.89
3	15	0.002	0.12	13.2	0.2	1	23	258	280	258	280	0.98
4	15	1.9e-06	0.00011	22.7	2.2	1	23	286	309	286	309	0.95
5	15	6.7e-05	0.0039	17.8	5.1	1	23	315	337	315	337	0.98
6	15	4.6e-07	2.7e-05	24.6	2.5	1	23	343	365	343	365	0.98
7	15	4.5e-07	2.6e-05	24.7	0.9	1	23	371	394	371	394	0.95
8	15	0.0015	0.089	13.6	0.3	2	23	400	422	399	422	0.96
9	15	1.5e-07	8.5e-06	26.2	1.4	2	23	428	449	427	449	0.97
10	15	2.4e-05	0.0014	19.2	2.0	2	23	458	479	457	479	0.97
11	15	5.5e-07	3.2e-05	24.4	1.5	1	23	484	507	484	507	0.95
12	15	0.0037	0.21	12.4	0.4	1	23	512	535	512	535	0.94
13	15	0.00019	0.011	16.4	1.2	1	23	540	563	540	563	0.94
14	15	2.4e-05	0.0014	19.3	1.8	1	23	568	590	568	590	0.98
15	15	1.2e-06	6.9e-05	23.3	0.6	1	23	595	618	595	618	0.95

Sequence Information

Coding Sequence: ATGGCTGAAACATCGAACCCAATACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTCTATTTTCCAACCACATTTACGAGAATGAAATTGAGAATTATTCGCAGATGTTGTACGATACATTCGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAGAAATGCTTGTTGGCGGGGGCATTGCTGCGCTCCACTTGACGGGGGCACTGCTGTGACCCCAGATGTGAAACACAATACCTCCGAAGATGAAGACAGTGACACGGATATGATAAATAAGGTTTTAGAGGAAGAGGTGAAAGTGGAAGAGAGCGGAAACAAATCGGTTGAAACCTTCAGTGAATGTGAAGAATTTACAGACAACATCGAACTTAAATCAGAAGAGAGTGTCGATGACGAAGACTCTCGTGTATACAAACTGTCAAACGAAGATGTCACAATTGAAGAGAGCGGAAAAGAGTCATTGAGTAAATCTGGTGTCAATTTAAGAAACACAATCGACAAACATGTGAACAAATGTAATATTTGCAATAAAACCTTTAAACGCAAATGGCACCTAGAAAATCATCTCAGAACTCACGAGAGCTATAAATGCAAAACGCACAAGTGCAAAGAGTGCGGTCGGACATTCGCAAGAAAGATAAACTTGCTTATGCATTGTCAAAAAGTGCACAAGGATATAAATAAGTATATTTGCCAGTATTGCGACACAAGAATGGCTACGAAAGAGCAATTGGTTGTACACGAAAGGATACACACGGGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAACGTTTGTCAATAAAACAAACCTACGGCAACATAAAACTGTTGTGCATTCGGCACTCAGGCCTTACGATTGTAACGTGTGTGATAAAAAATTCAAAAGAAAAAACAATTGCCAAAACCATATGTTGACGCATACAGGGATAAAATCTTTCCAATGCAATGTCTGTAGCAAGACTTTTAGGCAAAAACCGCATCTCAGTAGACACATGGCGGTCCATAATCACGAAAGACCGTACAAGTGCGACATATGCCAGAAGACATTTAGAGAGAAATCGAATTTAAGCAGCCACATGTCGGCTGTACATTTGGGCTTTACAATCGAGTGCGACATATGTAGGAAGACATTAAAATCCAAGGCGATTTTACGCCGCCACATGTTGTCTATACATTTGGGCTTTACAATCGAGTGTGAGATTTGTAAGAAAACATTTAAATCCAGGACGAATTTACGCCGCCACATGTCTATACATTTGGGCGTTAAGCCAACGCCCATTGAGTGTGAAATTTGCAATAAGACATTAAAATCCAAGACGTATTTACGCCACCACATGTCTGTACATTTGGACTTTACATTTGAGTGCGACATTTGTAGGAAGACATTTAAATCCAAGAACAATTTACGCCAGCACATGTCGCTTGTACATTTGGGCTTTACATTCGAGTGCGACATTTGTAGGAAGACATTAAAATCCAAGGGGATTTTACGCCAGCACATGTCGGATGTACATTCCGGCTTTACATTCGAGTGCGACATTTGTAGGAAGACATTTAAATCCAAGAGGATTTTACGCCAGCACATGTCGGATGTACATTCCGGCTTTACATTCGAGTGCGACATTTGCAAAAAGACTTTTAAATCCAGTGCGTGTATACGCCAACACATGGCTGTACATTTGGGCTTTACATTCGAGTGTGACATTTGTAAGAAGACATTTAACTACAGAGCGAGTTTAAACCGCCACATGTCGGCTGTACATTTGGGCTGCCCCAAAAATAGTGCATGA
Protein Sequence: MAETSNPIPFCRCCHKNGDFKCLFSNHIYENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKRNACWRGHCCAPLDGGTAVTPDVKHNTSEDEDSDTDMINKVLEEEVKVEESGNKSVETFSECEEFTDNIELKSEESVDDEDSRVYKLSNEDVTIEESGKESLSKSGVNLRNTIDKHVNKCNICNKTFKRKWHLENHLRTHESYKCKTHKCKECGRTFARKINLLMHCQKVHKDINKYICQYCDTRMATKEQLVVHERIHTGVKPYVCKKCNKTFVNKTNLRQHKTVVHSALRPYDCNVCDKKFKRKNNCQNHMLTHTGIKSFQCNVCSKTFRQKPHLSRHMAVHNHERPYKCDICQKTFREKSNLSSHMSAVHLGFTIECDICRKTLKSKAILRRHMLSIHLGFTIECEICKKTFKSRTNLRRHMSIHLGVKPTPIECEICNKTLKSKTYLRHHMSVHLDFTFECDICRKTFKSKNNLRQHMSLVHLGFTFECDICRKTLKSKGILRQHMSDVHSGFTFECDICRKTFKSKRILRQHMSDVHSGFTFECDICKKTFKSSACIRQHMAVHLGFTFECDICKKTFNYRASLNRHMSAVHLGCPKNSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388710;
90% Identity: iTF_01388710;
80% Identity: iTF_01388710;