Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392434.1:173629-178256[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0011 0.56 10.5 6.4 10 38 192 221 190 227 0.81

2 14 1.2 6.3e+02 0.8 3.4 3 23 244 264 242 273 0.84

3 14 0.0023 1.2 9.5 1.1 18 38 287 304 279 310 0.90

4 14 0.078 39 4.6 2.6 19 34 317 332 315 338 0.83

5 14 0.25 1.2e+02 3.0 3.2 16 43 342 367 335 368 0.85

6 14 0.0018 0.92 9.9 0.4 18 43 372 394 368 395 0.92

7 14 0.0055 2.8 8.3 0.7 17 43 399 422 396 423 0.83

8 14 0.00016 0.082 13.2 1.7 17 39 427 446 424 450 0.92

9 14 0.0029 1.4 9.2 2.3 15 39 455 476 449 480 0.86

10 14 0.00064 0.32 11.3 1.7 18 43 485 507 479 508 0.88

11 14 0.0083 4.2 7.7 0.2 18 43 513 535 510 536 0.84

12 14 0.012 5.9 7.3 0.2 18 43 541 563 537 564 0.87

13 14 0.0094 4.7 7.6 0.6 18 39 569 587 565 590 0.89

14 14 0.023 12 6.3 0.2 18 43 596 618 593 619 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0011	0.56	10.5	6.4	10	38	192	221	190	227	0.81
2	14	1.2	6.3e+02	0.8	3.4	3	23	244	264	242	273	0.84
3	14	0.0023	1.2	9.5	1.1	18	38	287	304	279	310	0.90
4	14	0.078	39	4.6	2.6	19	34	317	332	315	338	0.83
5	14	0.25	1.2e+02	3.0	3.2	16	43	342	367	335	368	0.85
6	14	0.0018	0.92	9.9	0.4	18	43	372	394	368	395	0.92
7	14	0.0055	2.8	8.3	0.7	17	43	399	422	396	423	0.83
8	14	0.00016	0.082	13.2	1.7	17	39	427	446	424	450	0.92
9	14	0.0029	1.4	9.2	2.3	15	39	455	476	449	480	0.86
10	14	0.00064	0.32	11.3	1.7	18	43	485	507	479	508	0.88
11	14	0.0083	4.2	7.7	0.2	18	43	513	535	510	536	0.84
12	14	0.012	5.9	7.3	0.2	18	43	541	563	537	564	0.87
13	14	0.0094	4.7	7.6	0.6	18	39	569	587	565	590	0.89
14	14	0.023	12	6.3	0.2	18	43	596	618	593	619	0.80

Sequence Information

Coding Sequence: ATGGCTGAAACATCGAACCCAATACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTCTATTTTCCAACCACATTTACGAGAATGAAATTGAGAATTATTCGCAGATGTTGTACGATACATTCGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAGAAATGCTTGTTGGCGGGGGCATTGCTGCGCTCCACTTGACGGGGGCACTGCTGTGACCCCAGATGTGAAACACAATACCTCCGAAGATGAAGACAGTGACACGGATATGATAAATAAGGTTTTAGAGGAAGAGGTGAAAGTGGAAGAGAGCGGAAACAAATCGGTTGAAACCTTCAGTGAATGTGAAGAATTTACAGACAACATCGAACTTAAATCAGAAGAGAGTGTCGATGACGAAGACTCTCGTGTATACAAACTGTCAAACGAAGATGTCACAATTGAAGAGAGCGGAAAAGAGTCATTGAGTAAATCTGGTGTCAATTTAAGAAACACAATCGACAAACATGTGAACAAATGTAATATTTGCAATAAAACCTTTAAACGCAAATGGCACCTAGAAAATCATCTCAGAACTCACGAGAGCTATAAATGCAAAACGCACAAGTGCAAAGAGTGCGGTCGGACATTCGCAAGAAAGATAAACTTGCTTATGCATTGTCAAAAAGTGCACAAGGATATAAATAAGTATATTTGCCAGTATTGCGACACAAGAATGGCTACGAAAGAGCAATTGGTTGTACACGAAAGGATACACACGGGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAACGTTTGTCAATAAAACAAACCTACGGCAACATAAAACTGTTGTGCATTCGGCACTCAGGCCTTACGATTGTAACGTGTGTGATAAAAAATTCAAAAGAAAAAACAATTGCCAAAACCATATGTTGACGCATACAGGGATAAAATCTTTCCAATGCAATGTCTGTAGCAAGACTTTTAGGCAAAAACCGCATCTCAGTAGACACATGGCGGTCCATAATCACGAAAGACCGTACAAGTGCGACATATGCCAGAAGACATTTAGAGAGAAATCGAATTTAAGCAGCCACATGTCGGCTGTACATTTGGGCTTTACAATCGAGTGCGACATATGTAGGAAGACATTAAAATCCAAGGCGATTTTACGCCGCCACATGTTGTCTATACATTTGGGCTTTACAATCGAGTGTGAGATTTGTAAGAAAACATTTAAATCCAGGACGAATTTACGCCGCCACATGTCTATACATTTGGGCGTTAAGCCAACGCCCATTGAGTGTGAAATTTGCAATAAGACATTAAAATCCAAGACGTATTTACGCCACCACATGTCTGTACATTTGGACTTTACATTTGAGTGCGACATTTGTAGGAAGACATTTAAATCCAAGAACAATTTACGCCAGCACATGTCGCTTGTACATTTGGGCTTTACATTCGAGTGCGACATTTGTAGGAAGACATTAAAATCCAAGGGGATTTTACGCCAGCACATGTCGGATGTACATTCCGGCTTTACATTCGAGTGCGACATTTGTAGGAAGACATTTAAATCCAAGAGGATTTTACGCCAGCACATGTCGGATGTACATTCCGGCTTTACATTCGAGTGCGACATTTGCAAAAAGACTTTTAAATCCAGTGCGTGTATACGCCAACACATGGCTGTACATTTGGGCTTTACATTCGAGTGTGACATTTGTAAGAAGACATTTAACTACAGAGCGAGTTTAAACCGCCACATGTCGGCTGTACATTTGGGCTGCCCCAAAAATAGTGCATGA
Protein Sequence: MAETSNPIPFCRCCHKNGDFKCLFSNHIYENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKRNACWRGHCCAPLDGGTAVTPDVKHNTSEDEDSDTDMINKVLEEEVKVEESGNKSVETFSECEEFTDNIELKSEESVDDEDSRVYKLSNEDVTIEESGKESLSKSGVNLRNTIDKHVNKCNICNKTFKRKWHLENHLRTHESYKCKTHKCKECGRTFARKINLLMHCQKVHKDINKYICQYCDTRMATKEQLVVHERIHTGVKPYVCKKCNKTFVNKTNLRQHKTVVHSALRPYDCNVCDKKFKRKNNCQNHMLTHTGIKSFQCNVCSKTFRQKPHLSRHMAVHNHERPYKCDICQKTFREKSNLSSHMSAVHLGFTIECDICRKTLKSKAILRRHMLSIHLGFTIECEICKKTFKSRTNLRRHMSIHLGVKPTPIECEICNKTLKSKTYLRHHMSVHLDFTFECDICRKTFKSKNNLRQHMSLVHLGFTFECDICRKTLKSKGILRQHMSDVHSGFTFECDICRKTFKSKRILRQHMSDVHSGFTFECDICKKTFKSSACIRQHMAVHLGFTFECDICKKTFNYRASLNRHMSAVHLGCPKNSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388727;
90% Identity: iTF_01388727;
80% Identity: iTF_01388727;