Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:4481371-4486813[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 2.9e-06 0.00017 22.1 2.9 2 23 143 164 142 164 0.98

2 24 0.19 11 6.9 2.2 1 23 167 190 167 190 0.97

3 24 0.0014 0.084 13.6 1.2 1 23 221 243 221 243 0.96

4 24 0.00023 0.013 16.2 1.0 1 23 249 271 249 271 0.99

5 24 0.00043 0.025 15.3 0.7 2 23 292 314 291 314 0.93

6 24 0.0023 0.13 13.0 0.8 2 23 321 343 320 343 0.89

7 24 0.00033 0.019 15.6 1.1 2 23 349 371 349 371 0.94

8 24 1.4e-05 0.0008 20.0 0.8 2 23 380 402 379 402 0.94

9 24 1.4e-05 0.0008 20.0 0.8 2 23 411 433 410 433 0.94

10 24 6.9e-06 0.0004 20.9 1.3 2 23 442 464 441 464 0.93

11 24 3.3e-05 0.0019 18.8 4.0 1 23 472 495 472 495 0.98

12 24 2.7e-05 0.0016 19.1 1.1 2 23 502 524 501 524 0.94

13 24 0.0015 0.087 13.6 2.5 2 23 531 553 530 553 0.97

14 24 2.7e-05 0.0016 19.1 1.1 2 23 560 582 559 582 0.94

15 24 1.6e-06 9.2e-05 23.0 2.0 2 23 589 611 588 611 0.96

16 24 1.3e-06 7.6e-05 23.2 2.6 2 23 618 640 617 640 0.94

17 24 0.0019 0.11 13.3 0.5 2 23 647 669 646 669 0.94

18 24 0.01 0.6 11.0 1.0 2 23 676 698 675 698 0.94

19 24 0.00031 0.018 15.8 0.7 2 23 705 727 704 727 0.94

20 24 1.5e-05 0.00086 19.9 0.9 2 23 734 756 733 756 0.94

21 24 0.0015 0.088 13.6 0.5 2 23 763 785 762 785 0.94

22 24 1.5e-06 8.6e-05 23.0 0.9 2 23 791 813 791 813 0.94

23 24 2.3e-05 0.0013 19.3 0.7 2 23 819 841 819 841 0.94

24 24 7e-07 4.1e-05 24.1 1.8 1 23 849 872 849 872 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	2.9e-06	0.00017	22.1	2.9	2	23	143	164	142	164	0.98
2	24	0.19	11	6.9	2.2	1	23	167	190	167	190	0.97
3	24	0.0014	0.084	13.6	1.2	1	23	221	243	221	243	0.96
4	24	0.00023	0.013	16.2	1.0	1	23	249	271	249	271	0.99
5	24	0.00043	0.025	15.3	0.7	2	23	292	314	291	314	0.93
6	24	0.0023	0.13	13.0	0.8	2	23	321	343	320	343	0.89
7	24	0.00033	0.019	15.6	1.1	2	23	349	371	349	371	0.94
8	24	1.4e-05	0.0008	20.0	0.8	2	23	380	402	379	402	0.94
9	24	1.4e-05	0.0008	20.0	0.8	2	23	411	433	410	433	0.94
10	24	6.9e-06	0.0004	20.9	1.3	2	23	442	464	441	464	0.93
11	24	3.3e-05	0.0019	18.8	4.0	1	23	472	495	472	495	0.98
12	24	2.7e-05	0.0016	19.1	1.1	2	23	502	524	501	524	0.94
13	24	0.0015	0.087	13.6	2.5	2	23	531	553	530	553	0.97
14	24	2.7e-05	0.0016	19.1	1.1	2	23	560	582	559	582	0.94
15	24	1.6e-06	9.2e-05	23.0	2.0	2	23	589	611	588	611	0.96
16	24	1.3e-06	7.6e-05	23.2	2.6	2	23	618	640	617	640	0.94
17	24	0.0019	0.11	13.3	0.5	2	23	647	669	646	669	0.94
18	24	0.01	0.6	11.0	1.0	2	23	676	698	675	698	0.94
19	24	0.00031	0.018	15.8	0.7	2	23	705	727	704	727	0.94
20	24	1.5e-05	0.00086	19.9	0.9	2	23	734	756	733	756	0.94
21	24	0.0015	0.088	13.6	0.5	2	23	763	785	762	785	0.94
22	24	1.5e-06	8.6e-05	23.0	0.9	2	23	791	813	791	813	0.94
23	24	2.3e-05	0.0013	19.3	0.7	2	23	819	841	819	841	0.94
24	24	7e-07	4.1e-05	24.1	1.8	1	23	849	872	849	872	0.95

Sequence Information

Coding Sequence: ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTGTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCTTGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACGTGTCAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAAGGACCGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGATGAAGTATCCAATCAAGATGATAGAATTGAAGAGAGCAGAAATGAATTAGATGAAACTGATAACAGCAGACATGATAATAAATGCAATATTTGCAATAAAACTTTTAGGTTCAAAAAGTACCTAGAAAGTCACATCAGATCTCACAAAGGCTATAAATGCCAAATGTGTCCACAAATATTGTCGAATCAGAGAGAACACTCAAAACACATAAATTCGAAGCACGTAATCGACGCCAAATATTGGTGTATCGCTTGCGATGCAACTTTTTTGGAAGTAAACGAGCTAAAATGTCACATCAAAACACACTTTAAACACCGTTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGCGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAGTGATGGGTTTACACTGAGCAGAAGTTTAAAGGCTCACATGAAAACACACAAGGACAGAACACCGCACGAGCCCCGCAATAGACAAATGTTGATGCATGCTGAGATTAAAGAGTGCGACATTTGCAAAAAGACATTTAACTACAAGAAGAATATACGCTACCACATTTTGGCTGTACATTCAGACCTTCCACCCATTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAAAATAGTTTAAGCAACCACACGTTTGCTGTACATTTGGGCTATGAGGAGGTGTGCAACATATGCAAGAAGATATTTAAATACAAGCTAGGTCTACACAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAAGCACATGTCGGCTATACATCTGGGCTCTGAGTTTAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGGACAGTATACACAATCACATGTCAACTGTACATTCGCACCTTCCACCCACTCAATGCGACATTTGCAAAAAGACATTTAAATACAAGAAGAATATACTCAGGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAAACATTTAAATCCAAGGACAGTATACACAATCACATGTCAACTGTACATTCGCACCTTCCACCCACTCAATGCGACATTTGCAAAAAGACATTTAAATACAAGAAGAATATACTCAGGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCAGAAAGACATTTAAATACAAATACAATTTAAGCAAGCACATGTCTGTTGTACATTTGGACCTTCCACCCATTCAGTGCAACATTTGCAAGAAGACATTTAAATACAAACATAATTTACGCAACCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATATAAACAGGGTTTAAGCATCCACATGTCGGCTGTACATTCGGACCTTCCACTCACTCAATGCAACATTTGCATGACGACATTTAAATATAAACAGAGTATTAACAGGCACATGTCAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAATTCCAAGGATAATATACGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAAGTTTAAGCAACCATATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATATAAAAATAGTTTAAGCAGCCACATATTGGCTGCACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACGCAAACACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAAAAGAATTTAAACATACACATGTCGGCTGTACATTAA
Protein Sequence: MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSLMLHVTFGILFEPSERVKIYTICDECIEKLRISTDLKIACGKIIKQGPLIKVDVKVEREETPTPNDEDNHSDINVVLDEVSNQDDRIEESRNELDETDNSRHDNKCNICNKTFRFKKYLESHIRSHKGYKCQMCPQILSNQREHSKHINSKHVIDAKYWCIACDATFLEVNELKCHIKTHFKHRCEVCNRDYQSKGELRKHEMAHKDERKFKCSICSDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLMHAEIKECDICKKTFNYKKNIRYHILAVHSDLPPIQCDICMKTFKNKNSLSNHTFAVHLGYEEVCNICKKIFKYKLGLHRHMLAVHLGSELRPLKCDICKKTFKYKLGLRRHMLAVHLGSELRPLKCDICKKTFKYKLGLRRHMLAVHLGSELRPLKCDICKKTFKYKQGLRKHMSAIHLGSEFRPFKCDICKKTFKYKDSIHNHMSTVHSHLPPTQCDICKKTFKYKKNILRHMLAVHSDLPPTQCDICMKTFKSKDSIHNHMSTVHSHLPPTQCDICKKTFKYKKNILRHMLAVHSDLPPTQCNICRKTFKYKYNLSKHMSVVHLDLPPIQCNICKKTFKYKHNLRNHMLAVHSDLPPTQCNICMKTFKYKQGLSIHMSAVHSDLPLTQCNICMTTFKYKQSINRHMSAVHSDLPPTQCDICMKTFNSKDNIRKHMSAVHSDLPPIQCDICKKTFKYKQSLSNHMSAVHSDLPPTQCDICMKTFKYKNSLSSHILAAHLGSEEVCNICKKTFKYKSGLRKHMLAVHLGSEEVCNICKKTFKYKLGLRRHMLAVHLGSELRPFKCDICKKTFKYKKNLNIHMSAVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388681;
90% Identity: iTF_01388681;
80% Identity: iTF_01388681;