Stip003655.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4481371-4486813[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.39 2e+02 2.4 4.4 16 29 141 154 133 164 0.73 2 24 0.52 2.6e+02 2.0 4.5 3 43 153 190 151 191 0.82 3 24 1 5.1e+02 1.1 3.0 12 30 216 234 195 240 0.84 4 24 0.39 2e+02 2.4 1.1 12 41 244 270 236 277 0.74 5 24 0.0094 4.7 7.6 1.4 18 43 292 314 286 315 0.87 6 24 0.0018 0.9 9.9 0.0 17 34 320 337 316 345 0.82 7 24 0.0026 1.3 9.4 1.0 18 39 349 367 346 372 0.81 8 24 0.0028 1.4 9.2 0.4 18 43 380 402 378 403 0.87 9 24 0.0028 1.4 9.2 0.4 18 43 411 433 409 434 0.87 10 24 0.0024 1.2 9.5 0.5 18 41 442 462 440 465 0.88 11 24 0.0062 3.1 8.2 1.2 18 42 473 494 471 498 0.78 12 24 0.0025 1.3 9.4 0.6 18 43 502 524 500 525 0.90 13 24 0.0089 4.5 7.6 1.4 18 42 531 552 529 556 0.77 14 24 0.0025 1.3 9.4 0.6 18 43 560 582 558 583 0.90 15 24 0.0025 1.3 9.4 2.6 18 43 589 611 587 612 0.87 16 24 0.00026 0.13 12.6 5.2 17 43 617 640 610 641 0.89 17 24 0.00053 0.27 11.6 0.4 18 43 647 669 645 670 0.86 18 24 0.027 14 6.1 1.8 18 39 676 694 671 699 0.79 19 24 0.0096 4.8 7.5 2.1 18 43 705 727 692 728 0.84 20 24 0.0016 0.79 10.1 2.4 5 43 721 756 717 757 0.77 21 24 0.00061 0.31 11.4 0.1 18 39 763 786 759 789 0.86 22 24 0.00012 0.062 13.6 1.0 18 43 791 813 790 814 0.90 23 24 0.00057 0.29 11.5 0.7 18 43 819 841 817 842 0.88 24 24 0.0072 3.6 7.9 0.5 18 43 850 872 848 872 0.86
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTGTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCTTGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACGTGTCAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAAGGACCGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGATGAAGTATCCAATCAAGATGATAGAATTGAAGAGAGCAGAAATGAATTAGATGAAACTGATAACAGCAGACATGATAATAAATGCAATATTTGCAATAAAACTTTTAGGTTCAAAAAGTACCTAGAAAGTCACATCAGATCTCACAAAGGCTATAAATGCCAAATGTGTCCACAAATATTGTCGAATCAGAGAGAACACTCAAAACACATAAATTCGAAGCACGTAATCGACGCCAAATATTGGTGTATCGCTTGCGATGCAACTTTTTTGGAAGTAAACGAGCTAAAATGTCACATCAAAACACACTTTAAACACCGTTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGCGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAGTGATGGGTTTACACTGAGCAGAAGTTTAAAGGCTCACATGAAAACACACAAGGACAGAACACCGCACGAGCCCCGCAATAGACAAATGTTGATGCATGCTGAGATTAAAGAGTGCGACATTTGCAAAAAGACATTTAACTACAAGAAGAATATACGCTACCACATTTTGGCTGTACATTCAGACCTTCCACCCATTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAAAATAGTTTAAGCAACCACACGTTTGCTGTACATTTGGGCTATGAGGAGGTGTGCAACATATGCAAGAAGATATTTAAATACAAGCTAGGTCTACACAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAAGCACATGTCGGCTATACATCTGGGCTCTGAGTTTAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGGACAGTATACACAATCACATGTCAACTGTACATTCGCACCTTCCACCCACTCAATGCGACATTTGCAAAAAGACATTTAAATACAAGAAGAATATACTCAGGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAAACATTTAAATCCAAGGACAGTATACACAATCACATGTCAACTGTACATTCGCACCTTCCACCCACTCAATGCGACATTTGCAAAAAGACATTTAAATACAAGAAGAATATACTCAGGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCAGAAAGACATTTAAATACAAATACAATTTAAGCAAGCACATGTCTGTTGTACATTTGGACCTTCCACCCATTCAGTGCAACATTTGCAAGAAGACATTTAAATACAAACATAATTTACGCAACCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATATAAACAGGGTTTAAGCATCCACATGTCGGCTGTACATTCGGACCTTCCACTCACTCAATGCAACATTTGCATGACGACATTTAAATATAAACAGAGTATTAACAGGCACATGTCAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAATTCCAAGGATAATATACGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAAGTTTAAGCAACCATATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATATAAAAATAGTTTAAGCAGCCACATATTGGCTGCACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACGCAAACACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAAAAGAATTTAAACATACACATGTCGGCTGTACATTAA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSLMLHVTFGILFEPSERVKIYTICDECIEKLRISTDLKIACGKIIKQGPLIKVDVKVEREETPTPNDEDNHSDINVVLDEVSNQDDRIEESRNELDETDNSRHDNKCNICNKTFRFKKYLESHIRSHKGYKCQMCPQILSNQREHSKHINSKHVIDAKYWCIACDATFLEVNELKCHIKTHFKHRCEVCNRDYQSKGELRKHEMAHKDERKFKCSICSDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLMHAEIKECDICKKTFNYKKNIRYHILAVHSDLPPIQCDICMKTFKNKNSLSNHTFAVHLGYEEVCNICKKIFKYKLGLHRHMLAVHLGSELRPLKCDICKKTFKYKLGLRRHMLAVHLGSELRPLKCDICKKTFKYKLGLRRHMLAVHLGSELRPLKCDICKKTFKYKQGLRKHMSAIHLGSEFRPFKCDICKKTFKYKDSIHNHMSTVHSHLPPTQCDICKKTFKYKKNILRHMLAVHSDLPPTQCDICMKTFKSKDSIHNHMSTVHSHLPPTQCDICKKTFKYKKNILRHMLAVHSDLPPTQCNICRKTFKYKYNLSKHMSVVHLDLPPIQCNICKKTFKYKHNLRNHMLAVHSDLPPTQCNICMKTFKYKQGLSIHMSAVHSDLPLTQCNICMTTFKYKQSINRHMSAVHSDLPPTQCDICMKTFNSKDNIRKHMSAVHSDLPPIQCDICKKTFKYKQSLSNHMSAVHSDLPPTQCDICMKTFKYKNSLSSHILAAHLGSEEVCNICKKTFKYKSGLRKHMLAVHLGSEEVCNICKKTFKYKLGLRRHMLAVHLGSELRPFKCDICKKTFKYKKNLNIHMSAVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388724;
- 90% Identity
- iTF_01388724;
- 80% Identity
- iTF_01388724;