Stip003660.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4526420-4530169[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.6e-05 0.00096 19.7 3.0 2 23 147 168 146 168 0.98 2 23 0.0012 0.07 13.9 1.8 1 23 171 193 171 193 0.96 3 23 1.6e-05 0.00093 19.8 1.4 1 23 199 221 199 221 0.99 4 23 0.0075 0.44 11.4 0.6 5 23 245 264 244 264 0.92 5 23 1.1e-06 6.3e-05 23.5 1.7 1 23 269 292 269 292 0.95 6 23 9.6e-06 0.00056 20.5 1.7 2 23 300 322 299 322 0.96 7 23 3.5e-06 0.0002 21.9 2.2 1 23 330 353 330 353 0.97 8 23 3e-05 0.0017 18.9 0.6 2 23 360 382 359 382 0.94 9 23 0.00018 0.011 16.4 1.5 2 23 389 411 388 411 0.94 10 23 0.0026 0.15 12.8 1.2 2 23 418 440 417 440 0.93 11 23 4.7e-05 0.0027 18.3 0.4 2 23 447 469 446 469 0.93 12 23 3e-05 0.0017 18.9 0.6 2 23 476 498 475 498 0.94 13 23 0.00018 0.011 16.4 1.5 2 23 505 527 504 527 0.94 14 23 0.00024 0.014 16.1 1.8 2 23 534 556 533 556 0.93 15 23 0.0048 0.28 12.0 2.1 2 23 563 585 562 585 0.92 16 23 6.4e-05 0.0038 17.9 0.4 2 23 592 614 591 614 0.93 17 23 0.00046 0.027 15.2 1.3 2 23 621 643 620 643 0.92 18 23 3.6e-06 0.00021 21.8 3.3 2 23 649 671 649 671 0.97 19 23 2.2e-05 0.0013 19.4 0.7 2 23 677 699 677 699 0.94 20 23 6.7e-05 0.0039 17.8 1.2 1 23 707 730 707 730 0.95 21 23 2.9e-05 0.0017 18.9 1.5 1 23 738 761 738 761 0.95 22 23 2e-07 1.2e-05 25.8 1.4 1 23 769 792 769 792 0.95 23 23 2.4e-07 1.4e-05 25.5 1.1 1 23 800 823 800 823 0.95
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTGTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGAAAAATTATTAAACAAGGACTGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGATGAAGTATCCAATCAAGATGGCAAAGTTGAAGAAAGCGGAAACGAATTAGATGAAACCTTCAGTAAATTTGAGAATGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGTACCTAGAAAGTCACATGAAGACACACTTTAAACACCGCTGTGAAGTATGCAACAGAGATTATCAGAGCAAAGATGAATTGCGTAAGCACGAAACGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTTAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGACCCCCGCAATAGACAAATGTTGACGCATGCTGAGATAAAAGAGCGCGATATATGCAAGAAGATCTTTAAACACAAACAGAGTTTACTCATGCATATGTCAGCTGTACATTTGGGCATTAAGTTTGAGTGCAACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCCAGCACATGTCGGCTGAACATTTGAGCCTTAAGCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGAATAATATACGCCAGCACATGTTGAGTGTACATTTGGGCTCTGAGTTAAGGCTCTTTAAATGTGATATTTGCAAGAAGACATTTAAATACAAACAGAGTTTAAGCACCCACATGTCTGTTGTACATTTGGGCCTTCCACCCATTCAGTGTGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAACAGAGTTTTAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTGAAATCCAGGGAAACTATACGCCATCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCATCCACATGTCGGCTGTACATTCGAACCTTCCACCCATTCAATGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAACAGAGTTTTAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACACACTCAGTGCGATATTTGCAAAAAGACATTTAAATCCAAGGAGACTATACACAAGCACATTTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCCGTACATTTGGGCCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATTTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAAAAAAGTTTAAGGACCCACACGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAAAATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACACAAGCACATGTTGACTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCATATGTTGGCCGTACATTTGGGCTCTGAGTTAAAGCCTTTTAAATGTGACATTTGCAAGAAGACAATAAAATACAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTAAAATACAAAAAGAATTTAAGCACCCACATGTTGGCTGTACATTTAGGCTCAGAGTTAAGGCCATTTAAATGTGACATTTGCAAGAAGACATTTAATTACAAAAGCAATTTGAACACCCACATGTTGGCTGTACATTTAAGCTCTGAGTTAAAGCCTTTTAAATGTGATATTTGCAAGAAGACATTTAATTACAAAAGCAATTTAAATGTACACATGTCGGCTGTACATTTACGTTTAAAGCGAACACACACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHVTFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQGLLIKVDVKVEREETPTPNDEDNHSDINVVLDEVSNQDGKVEESGNELDETFSKFENDRHENKCNICNKTFMFRKYLESHMKTHFKHRCEVCNRDYQSKDELRKHETVHKDERKFKCSICNNGFTLSRSLKAHMKTHKDRTPHDPRNRQMLTHAEIKERDICKKIFKHKQSLLMHMSAVHLGIKFECNICKKTFKSKQSLRQHMSAEHLSLKPPTQCDICKKTFKSKNNIRQHMLSVHLGSELRLFKCDICKKTFKYKQSLSTHMSVVHLGLPPIQCDICKKTFKYKQGLSNHMSAVHSDLPPTQCDICMKTFKNKQSFNRHMSAVHSDLPPIQCDICKKTLKSRETIRHHMSAVHSDLPPIQCDICKKTFKYKQGLSIHMSAVHSNLPPIQCDICKKTFKYKQGLSNHMSAVHSDLPPTQCDICMKTFKNKQSFNRHMSAVHSDLPHTQCDICKKTFKSKETIHKHILAVHSDLPPTQCDICMKTFKHKNSLSSHTLAVHLGLPPIQCDICKKTFKYKQGLSNHISAVHSDLPPTQCDICMKTFKNKKSLRTHTLAVHLGSEEVCKICKKTFKYKSGLHKHMLTVHLGSEEVCNICKKTFKYKLGLRRHMLAVHLGSELKPFKCDICKKTIKYKKNLSSHMLAVHLGSELRPFKCDICKKTLKYKKNLSTHMLAVHLGSELRPFKCDICKKTFNYKSNLNTHMLAVHLSSELKPFKCDICKKTFNYKSNLNVHMSAVHLRLKRTHTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388680;
- 90% Identity
- iTF_01388680;
- 80% Identity
- iTF_01388680;