Stip003660.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4526420-4530169[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.13 63 4.0 7.1 8 43 137 173 136 174 0.80 2 23 0.66 3.3e+02 1.7 3.0 6 29 160 183 157 194 0.77 3 23 0.048 24 5.3 1.9 12 41 194 220 184 227 0.79 4 23 9.5 4.8e+03 -2.0 0.1 21 34 245 255 244 265 0.70 5 23 0.0023 1.2 9.5 2.5 16 43 268 292 258 293 0.89 6 23 0.0017 0.85 10.0 0.6 18 43 300 322 298 323 0.92 7 23 0.0064 3.2 8.1 0.4 18 39 331 349 327 354 0.74 8 23 0.00033 0.17 12.2 0.1 17 43 359 382 357 383 0.89 9 23 0.014 6.8 7.1 0.8 18 43 389 411 387 412 0.84 10 23 0.06 30 5.0 4.7 14 43 414 440 405 441 0.76 11 23 0.0092 4.6 7.6 3.0 14 43 443 469 434 470 0.77 12 23 0.00033 0.17 12.2 0.1 17 43 475 498 473 499 0.89 13 23 0.014 6.8 7.1 0.8 18 43 505 527 503 528 0.84 14 23 0.36 1.8e+02 2.5 3.8 16 32 532 548 521 557 0.75 15 23 0.0092 4.6 7.6 2.9 17 39 562 586 547 587 0.84 16 23 0.00063 0.32 11.3 0.2 17 43 591 614 590 615 0.88 17 23 0.00067 0.34 11.2 0.3 18 39 621 644 619 647 0.93 18 23 0.00096 0.48 10.7 2.5 18 43 649 671 648 672 0.94 19 23 0.00069 0.35 11.2 1.0 18 43 677 699 676 700 0.87 20 23 0.00018 0.092 13.0 0.5 18 43 708 730 703 731 0.86 21 23 0.00019 0.096 13.0 0.3 18 43 739 761 737 765 0.74 22 23 0.0005 0.25 11.7 1.2 18 40 770 794 768 798 0.85 23 23 0.0032 1.6 9.1 1.6 18 43 801 823 794 831 0.81
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTGTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGAAAAATTATTAAACAAGGACTGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGATGAAGTATCCAATCAAGATGGCAAAGTTGAAGAAAGCGGAAACGAATTAGATGAAACCTTCAGTAAATTTGAGAATGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGTACCTAGAAAGTCACATGAAGACACACTTTAAACACCGCTGTGAAGTATGCAACAGAGATTATCAGAGCAAAGATGAATTGCGTAAGCACGAAACGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTTAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGACCCCCGCAATAGACAAATGTTGACGCATGCTGAGATAAAAGAGCGCGATATATGCAAGAAGATCTTTAAACACAAACAGAGTTTACTCATGCATATGTCAGCTGTACATTTGGGCATTAAGTTTGAGTGCAACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCCAGCACATGTCGGCTGAACATTTGAGCCTTAAGCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGAATAATATACGCCAGCACATGTTGAGTGTACATTTGGGCTCTGAGTTAAGGCTCTTTAAATGTGATATTTGCAAGAAGACATTTAAATACAAACAGAGTTTAAGCACCCACATGTCTGTTGTACATTTGGGCCTTCCACCCATTCAGTGTGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAACAGAGTTTTAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTGAAATCCAGGGAAACTATACGCCATCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCATCCACATGTCGGCTGTACATTCGAACCTTCCACCCATTCAATGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAACAGAGTTTTAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACACACTCAGTGCGATATTTGCAAAAAGACATTTAAATCCAAGGAGACTATACACAAGCACATTTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCCGTACATTTGGGCCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATTTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAAAAAAGTTTAAGGACCCACACGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAAAATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACACAAGCACATGTTGACTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCATATGTTGGCCGTACATTTGGGCTCTGAGTTAAAGCCTTTTAAATGTGACATTTGCAAGAAGACAATAAAATACAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTAAAATACAAAAAGAATTTAAGCACCCACATGTTGGCTGTACATTTAGGCTCAGAGTTAAGGCCATTTAAATGTGACATTTGCAAGAAGACATTTAATTACAAAAGCAATTTGAACACCCACATGTTGGCTGTACATTTAAGCTCTGAGTTAAAGCCTTTTAAATGTGATATTTGCAAGAAGACATTTAATTACAAAAGCAATTTAAATGTACACATGTCGGCTGTACATTTACGTTTAAAGCGAACACACACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHVTFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQGLLIKVDVKVEREETPTPNDEDNHSDINVVLDEVSNQDGKVEESGNELDETFSKFENDRHENKCNICNKTFMFRKYLESHMKTHFKHRCEVCNRDYQSKDELRKHETVHKDERKFKCSICNNGFTLSRSLKAHMKTHKDRTPHDPRNRQMLTHAEIKERDICKKIFKHKQSLLMHMSAVHLGIKFECNICKKTFKSKQSLRQHMSAEHLSLKPPTQCDICKKTFKSKNNIRQHMLSVHLGSELRLFKCDICKKTFKYKQSLSTHMSVVHLGLPPIQCDICKKTFKYKQGLSNHMSAVHSDLPPTQCDICMKTFKNKQSFNRHMSAVHSDLPPIQCDICKKTLKSRETIRHHMSAVHSDLPPIQCDICKKTFKYKQGLSIHMSAVHSNLPPIQCDICKKTFKYKQGLSNHMSAVHSDLPPTQCDICMKTFKNKQSFNRHMSAVHSDLPHTQCDICKKTFKSKETIHKHILAVHSDLPPTQCDICMKTFKHKNSLSSHTLAVHLGLPPIQCDICKKTFKYKQGLSNHISAVHSDLPPTQCDICMKTFKNKKSLRTHTLAVHLGSEEVCKICKKTFKYKSGLHKHMLTVHLGSEEVCNICKKTFKYKLGLRRHMLAVHLGSELKPFKCDICKKTIKYKKNLSSHMLAVHLGSELRPFKCDICKKTLKYKKNLSTHMLAVHLGSELRPFKCDICKKTFNYKSNLNTHMLAVHLSSELKPFKCDICKKTFNYKSNLNVHMSAVHLRLKRTHTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388723;
- 90% Identity
- iTF_01388723;
- 80% Identity
- iTF_01388723;