Stip003357.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synanthedon tipuliformis
Gene Symbol
-
Assembly
GCA_947623395.1
Location
OX392435.1:147788-153590[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 3.3e-08 1.9e-06 28.3 2.4 1 23 415 437 415 437 0.99
2 30 2.8e-05 0.0016 19.0 0.8 2 23 471 493 471 493 0.95
3 30 0.002 0.12 13.2 0.7 1 23 520 542 520 542 0.98
4 30 0.0077 0.45 11.3 0.3 1 23 548 570 548 570 0.93
5 30 5.8e-07 3.4e-05 24.3 1.8 1 23 578 600 578 600 0.98
6 30 1.9e-06 0.00011 22.7 3.3 1 23 606 628 606 628 0.99
7 30 2.9e-05 0.0017 19.0 3.9 1 23 634 657 634 657 0.97
8 30 1.7e-07 9.7e-06 26.0 1.5 1 23 665 688 665 688 0.97
9 30 6.7e-07 3.9e-05 24.1 1.2 3 23 695 716 693 716 0.95
10 30 1.3e-05 0.00075 20.1 2.4 1 23 724 747 724 747 0.94
11 30 2.5e-06 0.00015 22.3 0.7 3 23 754 775 752 775 0.95
12 30 1e-06 6e-05 23.5 2.1 1 23 783 806 783 806 0.97
13 30 0.0036 0.21 12.4 1.1 5 23 815 834 814 834 0.94
14 30 6.2e-07 3.6e-05 24.2 2.1 1 23 842 865 842 865 0.98
15 30 0.14 8.4 7.3 0.3 7 23 879 896 873 896 0.83
16 30 1e-05 0.00059 20.4 2.8 2 23 905 927 904 927 0.93
17 30 8e-06 0.00047 20.7 2.7 1 23 935 958 935 958 0.94
18 30 1.8e-06 0.0001 22.8 1.7 1 23 963 986 963 986 0.94
19 30 0.0024 0.14 13.0 0.2 5 23 998 1017 997 1017 0.92
20 30 5.7e-06 0.00033 21.2 1.1 1 23 1025 1048 1025 1048 0.94
21 30 5.7e-06 0.00033 21.2 1.1 1 23 1056 1079 1056 1079 0.94
22 30 5.7e-06 0.00033 21.2 1.1 1 23 1087 1110 1087 1110 0.94
23 30 1.8e-05 0.0011 19.6 1.9 1 23 1118 1141 1118 1141 0.94
24 30 1.8e-06 0.0001 22.8 1.7 1 23 1146 1169 1146 1169 0.94
25 30 1.8e-05 0.0011 19.6 1.9 1 23 1177 1200 1177 1200 0.94
26 30 9.7e-06 0.00057 20.5 3.9 1 23 1205 1228 1205 1228 0.94
27 30 0.0011 0.066 14.0 0.3 5 23 1240 1259 1239 1259 0.92
28 30 3.3e-06 0.00019 21.9 1.0 1 23 1267 1290 1267 1290 0.95
29 30 0.008 0.47 11.3 6.0 2 23 1296 1318 1293 1318 0.86
30 30 5.3e-05 0.0031 18.2 0.3 2 23 1327 1349 1326 1349 0.93

Sequence Information

Coding Sequence
ATGGCTGAAACATTAAACCCAACACCTTTTTGTAGATGTTGTCACAAGAATGGCGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGATGAGTGTATTGAAAAACTACGTATCTCAACGGAGTTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGAGGCACTGCAGAGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAGGAGGTCGAAGTTGAAGACAGCGGAAACAAATCTGATGAAACCTGGAGTGAATCTGAAACGTACTTCATAGAAGAAGCGTTATTAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACAATGAAGACTCTGGAATAAATAAGGTTGAAGATATCACAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATAAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCGGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAACGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCAATGAAGAGTGTGAAATGAAATCAGATGAAACCTTTAATGATGCTGGTGTCAGTTTGAGAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAATAAAACTTTCAAACGCAAGGTGACCCTAGAAAATCACATCAGAACTCACGATGGCTCTAAACGCCAAACACGTGCAGCAATATTGTTGAATAAGAGAGAGAACGCGAAACACCATCAGTTGAAGGTTCACATGGACAGACAGACACGTGAGTGCCAAGAGTGCGGCCGGAGATTCACAGAAAAGTCAAGCTTACTCAGGCATTATCAAAACATACACGTGGGTGGAAAAAAATTCACAGAAAAGAGAAAATTACTACGGCATTGTCGAGAGGTGCAAAATATGGATGTAAAAAAGTACAGTTGCCGGTTTTGCGATAAAAGACTTGCGACTAAACAGGCATTGGTTCTACATGAAAGGACACACACGGGAGTAAAATTGTATGTGTGCAAAATATGCGATAAACCGTTTCATAGTATAAGGGGTTTACTGGATCATAATGCAGTGCATTTGGAATATAATTATAAGCCTTTCACTTGTAACGTGTGTGATAAAGCATTCAAAAAGAAAAATACTTTAAACAGACACATCTTGACGCATACTAGGATAAAATCTTTTCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATAATCACATAAAGGTCCATACGAGCGAAAGTCCTTACAAATGCGGCACTTGCAAGAAGACATTTAAACACAAAAAGAGTTTAAGCGAGCACATGTCGGTTGTACATTTGGGCTTTAAACCAACGCTCTTTGAATGTGACATTTGTAAAAAGACATTTAAATACAAAAGTGATTTAAGGAAGCACATGTCGGTTGTACATTTGGGCTTTAAGCTTGACTGCAACATTTGCAAAAAGACATTTAAATACAAAAGTGATTTAAGGAAGCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCTCTTTGAATGTGACATTTGCAAAAAGACATTTAAACACAAAAAGAGTTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCTTGACTGCAACATTTGCAAAGAGACATTTAAATACAAAAGTGATTTAAGGAAGCACATGTCGGTTGTACATTTGGGCTTTAAACCAACGCTCTTTGAATGTGATATTTGTAAAAAGACATTTAAATCCAAACAGTATTTAACGAAGCACATGTCGGTTTTACATTTGGGCTTTAAGCTTGACTACAACATTTGCAAAAAGACATTTAAACACAAAAAGAGTTTAGGCGAGCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCTCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGAGAGCACATGTCGACTGTACATTTGAGCTTTAAACCAACGCCCTTTGAGTGTGATATTTACAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTCTGAGTGTGACATTTGTAAAAAGACATTTAAACACAAAAACAGTTTAAGGAAGCACATGTCGGCTGTACATTTCGGCTTTAAGCTAACCCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAACATAATTTAAGCAAGCACTTGTTGGCTGTACATTTGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCTCTTTGAGTATGATATTTGCAAAAAGGCATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGAGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAAACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCTCTTTGAGTGTGACATTTGTAAAAAGACATTTAAATATAAACATAATTTAAGCGAGCACTTGTTGGCTGTACATTTGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATGTCGGCTGTACATTTGGGCTTTAAGCTAACCCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAACATAATTTAAGCGAGCACTTGTTGGCTGTACATTTGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAACACAGTTTAAGGAAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAAACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTTGGCTGTACATTCGGGCTTTAAGTGTGACTGCAACATTTGCATGAAGACATTTAAATACAAAAGGAGTTTATGCAGGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCCTTGAGTGTGACATTTGCAAAAAGACATTTAAATCCGAACAGTATTTAACTGAGCACATGTCGGCTGTACATTTGGGCTTTAAAGGATTCACATAA
Protein Sequence
MAETLNPTPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLDGGTAETPDMKQETSEDEDSDMDIINEGSDEDCNQEVEVEDSGNKSDETWSESETYFIEEALLADDIKVETEEMVNNEDSGINKVEDITNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDITNEDSSINKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVGNEDSSMNKVLDEDSNEDVRNEDSSINKVSDEEFNEECEMKSDETFNDAGVSLRKASDIHEYKCNICNKTFKRKVTLENHIRTHDGSKRQTRAAILLNKRENAKHHQLKVHMDRQTRECQECGRRFTEKSSLLRHYQNIHVGGKKFTEKRKLLRHCREVQNMDVKKYSCRFCDKRLATKQALVLHERTHTGVKLYVCKICDKPFHSIRGLLDHNAVHLEYNYKPFTCNVCDKAFKKKNTLNRHILTHTRIKSFQCSVCSKSFARKDHFNNHIKVHTSESPYKCGTCKKTFKHKKSLSEHMSVVHLGFKPTLFECDICKKTFKYKSDLRKHMSVVHLGFKLDCNICKKTFKYKSDLRKHMSVVHLGFKPTLFECDICKKTFKHKKSLSEHMSAVHLGFKLDCNICKETFKYKSDLRKHMSVVHLGFKPTLFECDICKKTFKSKQYLTKHMSVLHLGFKLDYNICKKTFKHKKSLGEHMSVVHLGFKPTLFECDICKKTFKYKRNLREHMSTVHLSFKPTPFECDIYKKTFKYKRNLSEHMSAVHLGFKPTPSECDICKKTFKHKNSLRKHMSAVHFGFKLTPFECDICKKTFKYKHNLSKHLLAVHLGFKFDCNICKKTFKYKDSLRKHMSAVHLGFKPTLFEYDICKKAFKYKKNLSEHMSAVHLSFKPTPFECDICKKTFKYKRNLSEHMSAVHLGFKPTPFECDICKKTFKYKRNLSEHMSAVHLGFKPTPFECDICKKTFKYKRNLSEHMSAVHLGFKPTLFECDICKKTFKYKHNLSEHLLAVHLGFKFDCNICKKTFKYKDSLRKHMSAVHLGFKLTPFECDICKKTFKYKHNLSEHLLAVHLGFKFDCNICKKTFKYKHSLRKHMSAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKKNLSEHMLAVHSGFKCDCNICMKTFKYKRSLCRHMSAVHLGFKPTPLECDICKKTFKSEQYLTEHMSAVHLGFKGFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01388686;
90% Identity
iTF_01388686;
80% Identity
iTF_01388686;