Stip015805.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:2564566-2565744[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.6 4.8e+03 -2.1 0.3 16 22 30 36 27 41 0.80 2 9 0.0023 1.2 9.5 0.1 11 43 78 107 75 108 0.87 3 9 4.2 2.1e+03 -0.9 0.3 18 29 158 169 154 181 0.80 4 9 0.74 3.7e+02 1.5 0.3 15 26 183 194 170 199 0.82 5 9 0.65 3.3e+02 1.7 0.0 16 27 212 223 208 225 0.84 6 9 3.4e-05 0.017 15.4 0.5 12 43 238 266 225 267 0.85 7 9 0.014 7 7.0 2.0 5 26 260 281 260 293 0.88 8 9 0.0032 1.6 9.1 1.8 8 38 292 318 285 322 0.79 9 9 5.2e-06 0.0026 18.0 3.0 3 44 315 352 313 352 0.82
Sequence Information
- Coding Sequence
- ATGGTCCAAAAGTTGATGATTAAGCGGAGGAACTTGGAGTATATTTTACAGTACAGCAACGTCACACCTTTTATGTGGTACAAGGCGAAGTATCGGTGCTTCTACTGCCTAGAACCGTTCAAGGATCCCGACCTCCTCAAGGAGCACACGGCTAGTGCGCACCAATTCGCCAATTTAGAACTGGTCATATTCGACAGAACCAAAAAGAATAGGAACCGCGATGCTGCAGTCAAGATCGACGTGACCAATATTGTTTGCAAGCTGTGCAATCAGCCCATAGAAAACTTGGAGCAGCTGATACACCATTTGATCATAGCTCACGATGCGGAATACGACGTGAGCGTACCAAATTGCTTGCTGCCCTTCAAACTAGACAAGGAATCGCCCACCTGTCCCACGTGCAATACGAAGTTTGTCTTCTTCGAATACCTCCTGCGACACGCAAACAAATACCATCTCTCCCACGACTACATATGTGATATATGCGGAACAAGTTTCCAAGGAGAGAACCACCTGAAAATGCACAACAGATATTATCACAGGGAAGGCGGTTACACGTGCGACCATTGCGGCGTGACTCTTGTTACTCTGTCGAAGAAAATACTCCATGAGAAGAACGTGCATTTGGCGAATTTGGCTACGTGTCCCCATTGTCCTGAAACATTCAAAAGTCCATACTTCAAAAAGATACACATGGCGAACGTGCACGGGGTTGAGGAGTTGAAAATCAAATGTCCCTATTGCCCGAAAGTTTATCCTCAAGAGAGTATAATGTCGAGGCATATGAGACGCGTGCATTTGAGGGAGAAGAACGTAGAGTGTGAAGTGTGCGGTGATAAGTTTTTCGGGTCGTACGACGTGAAATTGCACATGCTAAAGCACAATGGCGAAAAGAAATACGTTTGTCCCGTGTGCGGTAAGAAATTCTCGAAAAAGAGTAACCTGAATTCTCACTACGCAATTCACTCGGAGAAGAGGGGTTATGTATGTGAGTTTTGCAATAAGAGTTTCTCGTACGAGACTAATTTGAGAGTGCACATTCGTACCAGACACTCGACAGAATATGTGATCATAGAAGAAAATGGAGGTCAAGTGGAATTAGACCCTGGTGAAGTGGTTCAGTACATTACAGAGGAGTTTGACAACTCACAAATTACCGGACAGTACAGCTTAGGGTAG
- Protein Sequence
- MVQKLMIKRRNLEYILQYSNVTPFMWYKAKYRCFYCLEPFKDPDLLKEHTASAHQFANLELVIFDRTKKNRNRDAAVKIDVTNIVCKLCNQPIENLEQLIHHLIIAHDAEYDVSVPNCLLPFKLDKESPTCPTCNTKFVFFEYLLRHANKYHLSHDYICDICGTSFQGENHLKMHNRYYHREGGYTCDHCGVTLVTLSKKILHEKNVHLANLATCPHCPETFKSPYFKKIHMANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGSYDVKLHMLKHNGEKKYVCPVCGKKFSKKSNLNSHYAIHSEKRGYVCEFCNKSFSYETNLRVHIRTRHSTEYVIIEENGGQVELDPGEVVQYITEEFDNSQITGQYSLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387831;
- 90% Identity
- iTF_01386918;
- 80% Identity
- iTF_01388774;