Stip007370.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392425.1:7955162-7955962[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-06 0.00064 20.1 0.0 2 44 90 131 89 154 0.83 2 3 0.0078 2.1 8.8 0.1 51 106 164 219 151 223 0.88 3 3 5.5 1.5e+03 -0.4 0.0 79 100 223 245 219 254 0.74
Sequence Information
- Coding Sequence
- ATGCAAATCAAATTTGGTCACCTATCGCCCGCATCAGCACCACCGCCGGACAAGCATCAGCAAGTTAACTGCATGCTTGTTCATTTCTCCAAAATTGAACACGATGATCCTTTGACTTACATTATCAAAATTGGAAGTAACGTGCTTAACATCAATATGACCATAGAAAGTAACAACGACGATTGGAGGGTAGTTTCACAAAACATTCCTAGGGCGGAACAATTTGATATCAGCGTTCAGTTGGATATAAAGCCAAGTGCTACATTTTCTAGTTTATTTGATGATACTGAATTTATAGATGTACAACTGCGAGCGCAAGATGGAGTTTTGGACGCGCACAAAACGATTTTGGCCATCTCCAGTCAGTTCTGGCGAAATAAACTTATATCTATGTCAAATGACAGAAATGGCATGTCAGATACAAAACCGACGAATGGAAAAATTAACATAAGTAATATACCAGGTCCATGCAATGCCAACGTAACAAATACATATGAAATTGACATGAATTACGCAAACATAAGTACATTGAACCACTTGAAGGAGTATTTGTATTTAGGCGTACTCCCGAACACAGAAGACGGGTTGTTAAACCTTTTGTTAGTGGCTACTTGTAATATGCTCAAGGATTTAGAGAAACGCTGTATATTTCATTTGTTATCAATAACAAACGAAAGTAATATACACAGGTTCCTAGAGTGTTCCCATATGTATAAGCTGGTGATATTCAGAAAAGCTCTCTTGGAACATGTGCATAGTCACGATGTCGTCGTTTCGCCAGTGCTGCCGCTTTGCAACTAG
- Protein Sequence
- MQIKFGHLSPASAPPPDKHQQVNCMLVHFSKIEHDDPLTYIIKIGSNVLNINMTIESNNDDWRVVSQNIPRAEQFDISVQLDIKPSATFSSLFDDTEFIDVQLRAQDGVLDAHKTILAISSQFWRNKLISMSNDRNGMSDTKPTNGKINISNIPGPCNANVTNTYEIDMNYANISTLNHLKEYLYLGVLPNTEDGLLNLLLVATCNMLKDLEKRCIFHLLSITNESNIHRFLECSHMYKLVIFRKALLEHVHSHDVVVSPVLPLCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388677; iTF_01385974; iTF_01388679; iTF_01387778; iTF_01386898; iTF_01386896;
- 90% Identity
- iTF_01388677;
- 80% Identity
- -