Stip021129.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- TFDP1
- Assembly
- GCA_947623395.1
- Location
- OX392408.1:5171318-5180560[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.84 4.6e+03 -2.3 0.0 14 31 32 49 27 50 0.79 2 2 1.2e-23 6.3e-20 70.9 0.1 2 65 174 253 173 253 0.98
Sequence Information
- Coding Sequence
- ATGTCACAGAAAAACAACACAGTCAATTTTGTTATACACGACGCCAATGGACAACCTCAGATGGTAAAAGTAAATAATCAATCATTTGTTCAAAATAAAATTAAATCTAATCCTGTAAAGATAATTAAGCTGTCAACTGCTGCAGAAACTAACTATCAGTCACCAGTTTATAAAACTGTGAAGTTGGCCAGTCTTAAATGTAAAACAAATATACAAGTACCTGTAGAAACTTTGACGTGTATACGAAAAGTAACAACACCTGAACAATTGCCAACAAAATACGAAGTTGACGACCAATTTGTACCTCATTCTATAGATGATTTGAAATATATTGAACCGGTGCCTAAATTTTTGTCAATACCCACAAAGGCTGAGCCCGTAACCCCTACAAAAGCTGACGATCCAGAAAAGAATAACCAATCACTGACAATGTCACATGCCTCCAGAAGAAGACATGACTCCGACAATGATGCTCCTGCAGAATATACCACAAAAAGGCGTAAACATGCGGACAAAGTTGGAAAAGGTTTACGACATTTTTCTATGAAAGTATGTGAAAAGGTTAGAAATAAAGGTTTCACGTCATATAATGAAGTCGCAGACGAATTAGTGTTGGAATTTGCGAATGGGATGCACGGCTCTGGGGATAGCCAACAATATGATCAAAAGAACATCCGTCGCAGAGTGTACGACGCGTTAAATGTTTTAATGGCGATGAATATAATATCAAAGGAGAAGAAGGAAATTCGGTGGATCGGGCTTCCCAGTGATTCAGTACAAGAATGTACGGCCTTGGAAAATGAAAAGTCTTCAACTATACAACGAATCCAACAGAAAACACAACAGTTACAAGAGCTTCTATTACAGCATATCTCGTTTAAAAGTTTGGCTGAAAGGAACAAAGAAGCAGAAAACAAAGGTGTAAAGCCATCTCCTTCGTCAGCCATCCACCTCCCTTTCATTGTTGTTAACACATCGGACAAAGCACTTATAGATTGTAGCATTTCTAATGATAAGACAGAATATATGTTTAACTTTAACAAACGTTTTCAAATACACGATGATATAGATATTTTGAAAAGGATGGGCTTACTAATGGGCTTAGACAAAGGGGAGTGTTCAGATGATAATATTGAAATAGCAAAAAAAATGGTGCCAAAAGCACTGGAATATTATGTGGAGCAAATGGGTAGGGGTATTACCACGAAAATAGCGAATATCCTCGAAGACGAGGATCCTGATGACAATGAAGATGAACTGGATGAGGATAACGAGGGAGAGTTTGAGGAGGAAGCGGAAGGAAACGAGTACAGCGACGACAGTAGTGATGTGGACGTGTAA
- Protein Sequence
- MSQKNNTVNFVIHDANGQPQMVKVNNQSFVQNKIKSNPVKIIKLSTAAETNYQSPVYKTVKLASLKCKTNIQVPVETLTCIRKVTTPEQLPTKYEVDDQFVPHSIDDLKYIEPVPKFLSIPTKAEPVTPTKADDPEKNNQSLTMSHASRRRHDSDNDAPAEYTTKRRKHADKVGKGLRHFSMKVCEKVRNKGFTSYNEVADELVLEFANGMHGSGDSQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWIGLPSDSVQECTALENEKSSTIQRIQQKTQQLQELLLQHISFKSLAERNKEAENKGVKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFNKRFQIHDDIDILKRMGLLMGLDKGECSDDNIEIAKKMVPKALEYYVEQMGRGITTKIANILEDEDPDDNEDELDEDNEGEFEEEAEGNEYSDDSSDVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386516; iTF_01385502;
- 90% Identity
- iTF_01385502;
- 80% Identity
- -