Stip008390.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- Rel
- Assembly
- GCA_947623395.1
- Location
- OX392415.1:6627105-6642211[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-25 1.3e-21 77.5 0.1 1 168 46 212 46 213 0.85 2 2 1.2 6.7e+03 -2.8 0.1 83 133 601 652 587 657 0.51
Sequence Information
- Coding Sequence
- ATGTCTGAATATAAAGGTGACTCGAACGACTTCAATGTGGCATTTCTAAGTTCAAAATATATGGATAATTCACCATCTCAACAAGTACCGCAATTAAAAGACATCTCCTATAAAGATATCATGCTTGATCCATATTTACAAATTGTCGAAGAACCACAAAATCGGTTTAGGTTCAGGTACAGGAGCGAATTAAATGTACCTCATGGATGCATATTTGGCCAATCATACGTCTCCACTAATATAGAAATACATCCCATGGTACAGCTTTTAAATTATGAAGGAGAAGCTACTATAAGATGCGGTCTTGCTCAAATCGATAACGAGGAAGATCATCCTCATGAAATAACAGACCAAAATGAACGAATAAGTGCTTTAGTACCAGAAAAAGGCAGCTATCGAGTAGCATTCCCCGGCCTAACTGTTATACACACACCTAGGAGAGACGTAGAAAAATTATTAGCAACAGCATATTGCAGGGATAACAACATTGAAAACGTCACTCCAGAGATTCGTAGGCAGTGCAAAATTGACGCTAAAAGAATCAATTTAAACATTGTTCGCTTGAAGTTTAGCGCACTCGACGTTAATACTGGCGCGGAAATATGCCCACCGGCATTTTCCCAAGCTATAAACAATTCGAAAAGCGCCGCCACAAATAATTTAAGAATTTGTCGCATGAGCAGAATGTATGGCAGCCCGCGCGGAGGTGACGATGTATTCATATTCGTTGAGAAAGTTAGCAGAAATGATATACAAGTTCGGTTTTTTGAGTTATGTGATGGTGAGGAATTATGGAGCGCTAATGGACGTTTCTCAAGATGTGATGTTCATTACCAGTATGCTATTGTATTTAGTACACCGCCGTACAGAGATACTAATATAACTACAGACGTGAGAGTTCAAATACAACTGGTACGGCCGTCAGATGACAGTGTGAGCAACTCAATGGACTTTATCTATAGAGGGACGCCGCATTCTATTAATAGAAACCCAGGCAAATCTTCAAACTTTTCATGGTATGAAGAATACAGGACAGAGTACCGCTATCTTTTTGAGTTGCCTAAAGGCGGAACGGGCGGAACAAAGACGGTCTTGAAGCTGTTTAATGGCCTCAAGTATTTAAAAAAACCAATTGAAATTGATGACACACAGTTTATGAAAATCAGAGGAACACTAAAAGAAATTCTTGAAACAACACTGACCAATGGAGAAAAATTTCTCCACATGATGATGTTGGAAGATCTGCCGTGTTTTTTTAAGCACACGATAAAGCTTATCAACAGCGTGAACTTATCGCACCTTCTCAATCTAGGAAACGTCCGAGGGCAGACAATACTCCATTTGACTACCTTCAACAATTTACCATTCCTAGTAATACCATTTCTGATACGTGAAGGCTGCGATCCTATGATTGGAGACTTAGCGGGGAATAACGCACTTCACTACGCTGTCATGTACAGGAACGCACTGAACATACTCATCAAAACAATCAAACGTTTCAAAGTGAAATTTGACCTAAATGCTTATAACGAAGAGAAACGCACGCCACTGCATTTGGTGGCGTTGCGTGGCTTATTGCCTGCTGCGTACTTACTTTTGAAGGAAGGCGCTTGCGTTAATATGCCGGACGCGAGCGGTCGCACGCCTTTGCATCTCGCCGTCGCCAGAGATTCCTCAGGATTAGTTGCAGCGATACTGCGCCAATCAAAACTGGTTGACGTAGACGCCGTTGATGGGACTGGATATACTGCATTACATATAGCATGCGAAAACAATAAAAATCCGGACATTGTTGAAGTCTTATTAAAATATAAGGCGGATCCAATGAAGAAAGTAGACAACCAGACAGCCTGGAAAATGGCAAGTAAACCTATCCGAAATCTGATGAAAAAGTACACAGAAAAAACAGAAGCCAGCGAGGATACATCCGACGAAGAGACATCATTAGAAGAATCAGTCGATCATTCGTGCGAAGAGACTCGTTTAAGAGACGATAAAGTGCTGATGTCTTGCGACCGTTGA
- Protein Sequence
- MSEYKGDSNDFNVAFLSSKYMDNSPSQQVPQLKDISYKDIMLDPYLQIVEEPQNRFRFRYRSELNVPHGCIFGQSYVSTNIEIHPMVQLLNYEGEATIRCGLAQIDNEEDHPHEITDQNERISALVPEKGSYRVAFPGLTVIHTPRRDVEKLLATAYCRDNNIENVTPEIRRQCKIDAKRINLNIVRLKFSALDVNTGAEICPPAFSQAINNSKSAATNNLRICRMSRMYGSPRGGDDVFIFVEKVSRNDIQVRFFELCDGEELWSANGRFSRCDVHYQYAIVFSTPPYRDTNITTDVRVQIQLVRPSDDSVSNSMDFIYRGTPHSINRNPGKSSNFSWYEEYRTEYRYLFELPKGGTGGTKTVLKLFNGLKYLKKPIEIDDTQFMKIRGTLKEILETTLTNGEKFLHMMMLEDLPCFFKHTIKLINSVNLSHLLNLGNVRGQTILHLTTFNNLPFLVIPFLIREGCDPMIGDLAGNNALHYAVMYRNALNILIKTIKRFKVKFDLNAYNEEKRTPLHLVALRGLLPAAYLLLKEGACVNMPDASGRTPLHLAVARDSSGLVAAILRQSKLVDVDAVDGTGYTALHIACENNKNPDIVEVLLKYKADPMKKVDNQTAWKMASKPIRNLMKKYTEKTEASEDTSDEETSLEESVDHSCEETRLRDDKVLMSCDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387393;
- 90% Identity
- -
- 80% Identity
- -