Smyo018128.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010001437.1:10063-14419[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.21 1.1e+03 0.0 0.1 27 35 95 103 89 107 0.80 2 9 0.0031 16 5.9 0.1 19 48 186 217 179 224 0.78 3 9 0.0005 2.6 8.4 0.0 22 46 245 269 233 275 0.88 4 9 0.017 86 3.6 0.0 23 49 318 344 305 349 0.85 5 9 0.00078 4 7.8 0.0 24 49 350 375 347 377 0.92 6 9 0.1 5.2e+02 1.1 0.0 26 48 382 404 378 407 0.84 7 9 0.035 1.8e+02 2.5 0.2 21 48 407 434 403 439 0.81 8 9 0.016 82 3.6 0.0 24 48 440 464 436 467 0.88 9 9 0.012 60 4.1 0.1 23 49 469 495 464 497 0.84
Sequence Information
- Coding Sequence
- ATGCCAGCACCGCACTTTATTGGGACAGCGGTGGTAAGTGCGATGTCGCCTCCAGTAATACATATTAGCTCAATGACACAGACCACTGAGTTCATCACTCCACCAGGGGACATTATGCTTGGGTGGCTTCCTTTTCCGGGGAGGAAACGCAGCCTTGCACGCATTATCAATACATTCCGTATATTTACTTATCAGTTCCTCGCAACTCGTATGATTTCCAATCCAATTTCCATTCTCTCCAGGGGAATGGATCTTCTCACCGCTGACCCTCCATCGTTTTTATGTCCGCGCTGCTATTATGTTACGCAACGACATAAGAGCGGAGCGCTGCTCTGCCCATTCAGCCAAAGTGCGCTGCGCAGTGTCAACCGCGGAGCCACAATGAAATCACTCCTTGAAGTACCGTTGATTAAAGTCGACGTAAAAGTTGAAAAGGAAAAGCCTCCCACTCACAACGATGAAGACTATCGCTCAGATGTAAATGTGGTTTTAGATGAAGTATCCAATCAAGATGGCAGAATTGAAGAGAACCGAAACGAATTAGGTGAAACCTTCAGTCAATCTGAGAACGGCAGACACGAGAATAAATGCAATATTTGCAATAAAATTTTTAGGTCAAAAAAGTACCTAAAAAGTCACATCAAAACGCACTTTAAACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGGATTACGTAGGCACGAAATTGTGCATAAGGATGAGAGAAAGTTTAAGTGCACAATATGTAATAATGGGTTTACACTGAGCAGAAATTTGAAGGCTCACATGGAAACACACAAGGACAGAACACCACACGAACACCGCAATAGACAAATGTTGACGCATGCTGATATAAAAGAGCGCGACATTTGCAAGAAAACATTTAAATCCAAGGACAGTATACAAAAGCACATGTCGGCTGTACATTCGGGCCTTAAGCCACCCACTCAGTGCGACATTTGCGAAAAGACATTTAAATCTAAGAAGATTATACGCAGCCACATGATGGTTGTGCATTTGGGCTTTAAACCAACGCCCACTGAGTGCAACATTTGCAAGAAGACATTTAAATACAAACAGAATTTAAGCAAGCACCTGTCTGTAGTACATTTGGACCTTTTGCCATCCACTCAGTGCGAAATTTGCAAGAAGTCATTTAAACACAAAGAGAGTTTAAGCAGGCACATGTCGGCTCTACATTCGGACCGTGAGCCACATACTCAGTGCGACATATGCAAGAAGACATTTAAACACAAACACAGTTTAAACAGGCATAAGTCGGCAGTACATTTGGGCATTAAGCCACCCACTCAGTGCGACATATGCAAAAAGACATTTAAACACAAAGAGAGTTTAAGCAGACACATGTCGGCTTTACATTCGGGCCGTGAGCCATCCACTGAGTGCGACATATGCAAGAAGACATTTAAACATAAACACAGCTTAAGCAGGCATAAGTCGGCTGTACATTTTGGCAATTAG
- Protein Sequence
- MPAPHFIGTAVVSAMSPPVIHISSMTQTTEFITPPGDIMLGWLPFPGRKRSLARIINTFRIFTYQFLATRMISNPISILSRGMDLLTADPPSFLCPRCYYVTQRHKSGALLCPFSQSALRSVNRGATMKSLLEVPLIKVDVKVEKEKPPTHNDEDYRSDVNVVLDEVSNQDGRIEENRNELGETFSQSENGRHENKCNICNKIFRSKKYLKSHIKTHFKHRCEVCNRDYQSKGGLRRHEIVHKDERKFKCTICNNGFTLSRNLKAHMETHKDRTPHEHRNRQMLTHADIKERDICKKTFKSKDSIQKHMSAVHSGLKPPTQCDICEKTFKSKKIIRSHMMVVHLGFKPTPTECNICKKTFKYKQNLSKHLSVVHLDLLPSTQCEICKKSFKHKESLSRHMSALHSDREPHTQCDICKKTFKHKHSLNRHKSAVHLGIKPPTQCDICKKTFKHKESLSRHMSALHSGREPSTECDICKKTFKHKHSLSRHKSAVHFGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387818;
- 90% Identity
- iTF_01387818;
- 80% Identity
- iTF_01387818;