Smyo008455.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000446.1:1560-5242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 0.61 10.8 0.1 2 23 163 185 162 185 0.91 2 13 0.016 0.94 10.3 0.5 1 23 191 213 191 213 0.98 3 13 9.6 5.6e+02 1.5 0.1 3 16 221 234 220 236 0.80 4 13 0.035 2.1 9.2 2.5 1 19 243 261 243 264 0.91 5 13 0.27 16 6.4 0.4 2 23 315 336 314 336 0.97 6 13 0.035 2.1 9.2 1.9 3 23 344 364 343 364 0.96 7 13 1.1e-05 0.00067 20.2 0.2 1 21 369 389 369 390 0.95 8 13 0.034 2 9.2 0.4 2 23 419 440 418 440 0.96 9 13 1.1e-05 0.00067 20.2 2.0 1 23 447 469 447 469 0.98 10 13 0.0047 0.27 12.0 1.6 2 23 476 497 475 497 0.97 11 13 3.3e-05 0.0019 18.7 4.0 1 23 503 525 503 525 0.99 12 13 0.0072 0.42 11.4 3.4 1 23 531 553 531 553 0.92 13 13 3.5e-05 0.002 18.6 2.7 1 23 559 582 559 582 0.98
Sequence Information
- Coding Sequence
- ATGAGCGCTACAAAACACTGCCGTTTTTGCGCTGAACTGAAACCTACACTCGATTTAATGGATTTTGAAAACGACATAAAATTCCGCGAAGAGATTACCCAAAAACTTTTACATTTCAGCGTAAATTATGTGGACTTTTCTAATAATTTATTACCGGAGGCTGTATGCTTACATTGCTACGACTCTTTGAACTCCGCTTACGAGTTTTTTAACAAAATTAAAAATGCCCAAGAAACATTACGAGAATTACATTTGAATGACGAAGTTAAAATCGAAAAATATTTAATAGCCGAACACTCTATTGACAATTACGAATCTAACGTTTACATAAAATACGAGAGTCCTCCGAATAGATCACTGGAAATCTCCTACGATGATTCAATCACTTCGTGCAGTAAACCCGATTTGGTATTTCCTCCTGGTATATGTGAAAGTGGCTGTGACAAAAATGATGGGCTCATTTTGAATTGGCACTCGTACTCTTGGAGTTGTAAGTTATGTAGCGAAATATTCACAGATTTAGTCGGTTTAAGAAATCACTCGAAAGCCCTCCATGGTATTTGCAATTCATTTAAATGTACAGATTGTGGAGAAGCATGGACAATTTTTCACGATTTTATTGAACACATTAGGTCACATAGAGATGATCTCATAAACTTCTGTCCGTATTGTAATATCAAAGTTGAAAACGAAAACGATCTTCATATTGAAATGCACACATCAAAACACGAATGTCATTTGTGCGGTGAAACATTTTGCGATGAAAACGAGAGACGGACACATTTTGATATATATTGCAAATTGAATGAAGTCAGTGGGATAAAATTGCAAGAAACATGGAATGATTATAGCTGGATATGTAAATTTTGCAGCATCCTACTGCCAAATGAAAATATTTTGAGGACGCACACAAAAGAGACGCACAAAAAATGTTTTGGGATGCAATGCGTCGATTGCAAAATTAATGTCGAAACTTTCAACTCGTTTGTAACACACGTTAGGTCTCATAGGTCCAATTTGAAAAATTTCTGTCAGTACTGCAATCACATGTTCAAAGACTCACAAGACACTGTTATACATTTGGCTAAACATTTCGATGGCCAATTTCAGTGCGAAGACTGTTCAGAAGTCTTCTCCTCGAGAGACGGTCTTCAGAGACACACAAAATTATACCGCACACCGATTACCGAGGAAAGAACTAAGAAATCAAGGCACAGACGAAGAAGAGTTAAGCCGATCACAACAGAAGAGTTGACATGTGACGTGTGCCAGAAAGTTATGAAGACTATAAACGGCCTATACAAACATAGACAAGTGCACAAACAAAGAAGCAGAGACTATACGTGTGACAGGTGCGGAAAAGCCTTCTTCTCTAAAGCCTGCCTCACCAGCCACATTCAAATACATGAAAACAATACACCACAAGTGTGCCAAATATGCAAAAAGACTTTCCTCACTCTGACAAGACTTAAAAAACATGTTTTGACCCATTCCGGTGAAAAGCCGTTCAAGTGCTCGGAATGTAATCGGTGCTTCAGATTGAAAGAACAATTGAAGGGTCACCAGATAACGCACACAGACCTATTGCCGTATTCTTGTCAGTATTGTGATAAGGCGTTTCGTCATAAAAACGTCAAAAGAATACACGAGAATCAGCATACGGGAGCTCAAGCGTATCCGTGTAAAGTGTGCGATAAAGTCTTGTCGAATTGGTCCAATTGTAATAAGCATATGAAGAGAAAACACGGCACAACACTGGCGAAGAATAAACTGACTCCTCAAGGGAGGCTGCCAATAAATCCCAAAACTGGTAGACCGAAGAAAATAAATATGGAAAATGTTAAAGAGTGGACGGACAAAATTTTGGCCCCAGTCAATAGGAGGAAAGTGATGGCATAA
- Protein Sequence
- MSATKHCRFCAELKPTLDLMDFENDIKFREEITQKLLHFSVNYVDFSNNLLPEAVCLHCYDSLNSAYEFFNKIKNAQETLRELHLNDEVKIEKYLIAEHSIDNYESNVYIKYESPPNRSLEISYDDSITSCSKPDLVFPPGICESGCDKNDGLILNWHSYSWSCKLCSEIFTDLVGLRNHSKALHGICNSFKCTDCGEAWTIFHDFIEHIRSHRDDLINFCPYCNIKVENENDLHIEMHTSKHECHLCGETFCDENERRTHFDIYCKLNEVSGIKLQETWNDYSWICKFCSILLPNENILRTHTKETHKKCFGMQCVDCKINVETFNSFVTHVRSHRSNLKNFCQYCNHMFKDSQDTVIHLAKHFDGQFQCEDCSEVFSSRDGLQRHTKLYRTPITEERTKKSRHRRRRVKPITTEELTCDVCQKVMKTINGLYKHRQVHKQRSRDYTCDRCGKAFFSKACLTSHIQIHENNTPQVCQICKKTFLTLTRLKKHVLTHSGEKPFKCSECNRCFRLKEQLKGHQITHTDLLPYSCQYCDKAFRHKNVKRIHENQHTGAQAYPCKVCDKVLSNWSNCNKHMKRKHGTTLAKNKLTPQGRLPINPKTGRPKKINMENVKEWTDKILAPVNRRKVMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387040;
- 90% Identity
- iTF_01386101;
- 80% Identity
- -