Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000143.1:678741-681496[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0026 0.15 12.8 0.2 2 23 163 185 162 185 0.92

2 13 0.00024 0.014 16.1 1.0 1 23 191 213 191 213 0.99

3 13 0.075 4.3 8.2 1.9 2 19 244 261 243 263 0.91

4 13 5.9 3.4e+02 2.3 0.2 3 23 287 308 285 308 0.91

5 13 0.011 0.65 10.8 0.2 2 23 315 336 314 336 0.97

6 13 1.1 64 4.5 0.5 3 15 344 356 343 364 0.81

7 13 7.3e-06 0.00041 20.9 0.2 1 21 369 389 369 390 0.95

8 13 0.012 0.7 10.7 1.5 2 23 419 440 418 440 0.97

9 13 1.5e-05 0.00087 19.8 1.6 1 23 447 469 447 469 0.98

10 13 0.015 0.83 10.5 1.9 2 23 476 497 475 497 0.97

11 13 3.4e-05 0.0019 18.8 4.0 1 23 503 525 503 525 0.99

12 13 0.0085 0.48 11.2 3.9 1 23 531 553 531 553 0.93

13 13 3.6e-05 0.0021 18.7 2.7 1 23 559 582 559 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0026	0.15	12.8	0.2	2	23	163	185	162	185	0.92
2	13	0.00024	0.014	16.1	1.0	1	23	191	213	191	213	0.99
3	13	0.075	4.3	8.2	1.9	2	19	244	261	243	263	0.91
4	13	5.9	3.4e+02	2.3	0.2	3	23	287	308	285	308	0.91
5	13	0.011	0.65	10.8	0.2	2	23	315	336	314	336	0.97
6	13	1.1	64	4.5	0.5	3	15	344	356	343	364	0.81
7	13	7.3e-06	0.00041	20.9	0.2	1	21	369	389	369	390	0.95
8	13	0.012	0.7	10.7	1.5	2	23	419	440	418	440	0.97
9	13	1.5e-05	0.00087	19.8	1.6	1	23	447	469	447	469	0.98
10	13	0.015	0.83	10.5	1.9	2	23	476	497	475	497	0.97
11	13	3.4e-05	0.0019	18.8	4.0	1	23	503	525	503	525	0.99
12	13	0.0085	0.48	11.2	3.9	1	23	531	553	531	553	0.93
13	13	3.6e-05	0.0021	18.7	2.7	1	23	559	582	559	582	0.98

Sequence Information

Coding Sequence: ATGAGCGCTACAAAACACTGCCGTTTTTGCGCTGAACTGAAACCTACACTCGATTTAATAGATTTTGAAAACGACATAAAACTCCGCGAAGAAATCACCCAAAAACTTTTACATTTCAGCGTAAATTGTGTGGACTTTTCTAATAATTTATTACCGGAGGCTGTATGCTTACATTGCTACAACTCTTTGAACTCCGCGTACGAGTTTTTTAACAAAATTAAAAACGCCCAAGAAACATTACACGAATTACACTTGAGTGACGAAGTTAAAATAGAAAAGTATTTAAACGCTGAAGACTCTATTGATAATTACGAGTCTAACGTTTACATAAAATACGAGAATCCTCCAAATATTTCACTTGAAATCTCCTTTGATGATTCTATAACTTCATGCAATAAACCCGATTTTGTATTTCCTTCTCGTATATGTGAAATTGGCTGTGACAAAAATGATGGGCTCATTTCGAATTGGCACTCGTACTCTTGGAGTTGTAAATTATGTAGCGAAGCATTCACAGATTTAGTCAGTTTAAGAAATCACTCGAAAGCCCTACACGGTGTTTGCAATTCATTTAAATGTACCGATTGTGGAAAAGGAGGAGAAAATTTTCACGATTTTATTGAACACATTAGGTCACATAGAGATGATCTTAAGAACTTCTGTCCGTATTGTAATATTAAACTTGAGGATGAAAACAAAATGCATATTGAACTGCACACATCAAAAACCGAATGTCATTTGTGCGGTGAAACATTTTGTGATGAAAACGAAAGACAGACACATTTTGAACTGTATTGCAAATCGAAAGAAGCCACAGGGATAAAATTGCAAGAATCATGGAACGATTATAGTTGGATATGCAAATTTTGCAGCATTCTACTGCCAAATGAAAATATGTTGAGAATGCACACAAAAGAGATGCACAAAAAATGTTTTGGTATGCAATGCGTAGATTGCAAAATTAGTGTCGAAACTTTCAGCTCGTTTGTAGCACATGTTAGGTCTCATAGGCCCAGTTTGAAAAACTTCTGTCAGTACTGTAATCACATGTTCAATGACTCACAAGACACTGTTCCACATTTGGCTGAACATTTCGATGGCCAATTTCAATGCGAAGACTGTTCGGAGGTCTTCTCCTCGAAAGACGGTCTTCAGAGACACACAAAATTGTACCGCACACCGAATACCGAGGAAAAAACTAAGAAATCAAGGCACCGAAGAAAAAGAATGAGATCGATCACAGCAGAAGACTTGACCTGCGATGTGTGCCATAAAGTCATGAAGACTCTAAACGGACTATACAAACATAGACAAGTGCACAAACAAAGAAGCAGAGACTATACGTGCGACAGATGCGGAAAAGCCTTTTTCTCTAAAGCCTGCCTCACGAGCCACATTCTAATACATGAAAATAATACACCTCAAGTGTGTCAAATATGCAAAAAGACTTTCCTCACCATGAGAAGACTAAAAAAACACGTTTTGACCCATTCCGGAGAAAAGCCGTTCAAGTGCTCGGAGTGTAATCGATGCTTCAGATTGAAAGAACAATTGAAGGGACATCAGATAACTCACACAGACCTATTGCCGTATTCATGCCAGTATTGTGATAAGGCTTTTAGGCATAAAAACGTCAAAAGAATACACGAAAAACAGCATACGGGAGCTCAAGCGTATCCATGTAAAGTTTGCGATAAGGTCTTGTCCAATTGGTCCAATTGTAACAAGCATATGAAGAGAAAACATGGCACAACGCTGGCGAAGAATAAACTGACTCCTCAAGGGAGACTGCCAATAAACCCTAAAACTGGTAGACCGAAGAAAATAAATATGGAAAATGTGAAGGAGTGGATGGAAAAAATTATGAAAAAATAG
Protein Sequence: MSATKHCRFCAELKPTLDLIDFENDIKLREEITQKLLHFSVNCVDFSNNLLPEAVCLHCYNSLNSAYEFFNKIKNAQETLHELHLSDEVKIEKYLNAEDSIDNYESNVYIKYENPPNISLEISFDDSITSCNKPDFVFPSRICEIGCDKNDGLISNWHSYSWSCKLCSEAFTDLVSLRNHSKALHGVCNSFKCTDCGKGGENFHDFIEHIRSHRDDLKNFCPYCNIKLEDENKMHIELHTSKTECHLCGETFCDENERQTHFELYCKSKEATGIKLQESWNDYSWICKFCSILLPNENMLRMHTKEMHKKCFGMQCVDCKISVETFSSFVAHVRSHRPSLKNFCQYCNHMFNDSQDTVPHLAEHFDGQFQCEDCSEVFSSKDGLQRHTKLYRTPNTEEKTKKSRHRRKRMRSITAEDLTCDVCHKVMKTLNGLYKHRQVHKQRSRDYTCDRCGKAFFSKACLTSHILIHENNTPQVCQICKKTFLTMRRLKKHVLTHSGEKPFKCSECNRCFRLKEQLKGHQITHTDLLPYSCQYCDKAFRHKNVKRIHEKQHTGAQAYPCKVCDKVLSNWSNCNKHMKRKHGTTLAKNKLTPQGRLPINPKTGRPKKINMENVKEWMEKIMKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387911; iTF_01386101; iTF_01388832;
90% Identity: iTF_01386101;
80% Identity: -