Smyo010957.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000625.1:33136-38507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.2e-08 3e-06 27.5 2.5 1 23 381 403 381 403 0.99 2 18 0.00072 0.042 14.5 4.7 1 19 436 454 436 459 0.89 3 18 8.9e-07 5.2e-05 23.7 1.6 1 23 524 546 524 546 0.99 4 18 1.6e-05 0.00093 19.7 2.4 1 20 551 570 551 571 0.98 5 18 1e-05 0.0006 20.3 1.0 2 23 583 605 582 605 0.95 6 18 3.4e-06 0.0002 21.8 1.4 1 23 610 633 610 633 0.94 7 18 1.6e-05 0.00093 19.7 1.2 1 23 638 661 638 661 0.94 8 18 0.0055 0.32 11.7 2.6 1 23 666 689 666 689 0.96 9 18 0.0002 0.011 16.3 0.9 1 23 694 717 694 717 0.96 10 18 6.1e-06 0.00036 21.0 0.6 3 23 724 745 722 745 0.93 11 18 0.00013 0.0076 16.8 1.5 1 23 750 773 750 773 0.94 12 18 5e-05 0.0029 18.2 0.8 2 23 779 801 778 801 0.93 13 18 0.00038 0.022 15.4 1.9 1 23 806 829 806 829 0.94 14 18 2.3e-05 0.0013 19.2 0.9 1 23 834 857 834 857 0.94 15 18 3e-06 0.00018 22.0 3.3 1 23 862 885 862 885 0.97 16 18 1.9e-05 0.0011 19.4 1.0 1 23 890 913 890 913 0.93 17 18 2.5e-05 0.0014 19.1 1.0 1 23 918 941 918 941 0.93 18 18 1.3e-05 0.00078 20.0 1.7 1 23 946 969 946 969 0.95
Sequence Information
- Coding Sequence
- ATGATGGGATATGTCGTTCCATTTGCAGACGACACAGCTCCGGTCACAGATTTTGTGCCCTCCAAAGACGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACACGTCTCGACGGAATTTAAGAATTGTGTACTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGCTCGACTTGACGGGGGCACTGCAATGACCCCAGATATGAAACAAGGACCATTAATAGCAGACAACATCAAATTTGAAACAGATGAGATGGACAACAATGAAGAATCAAGTATAAATAATTTATTAGATGGAGAGTTTAATGAAGATGTCAGAAATGAAAACTCAAGAATAAATAATTTATTAGATGAAGAGTTCAATAAAAATGTCAGAAATGAAGACTCAAGTATAAATAATTTTTTAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAATTATAAATAATTTATTAGATGAAGAGTTCAATGAAAATGTCAGAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGCATAAATAATTTTTTAGAAGAAGAGTTCAATGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGATTTTAGATGAAGAGTCCATTGAAGATGTCAGAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGCATAAATAATTTTTTAGAAGAAGAGTTCAATGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGATTTTAGATGAAGAGTCCATTGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTTAGATGAAGAGTTCATTGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTTAGATGAAGGGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCATTGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGGTTTTAGATGAAGAGTTTAATGAAGAGAGTGAAATGAAATCAGATGAAACCTTTAGTGATGCTGGTGTCGGTTTAAGAAAAGCAAGCGAAATACATGAGTATAAATGCACCATTTGCAATAAAACTTTTAAACGCAAAGTGAACCTAGAAAATCATGTCAAAACTCACGACGGCTCTAAACGCCAAACATGTCCAGAAATACTATCGAATAAGAGAGAGAACGCGAAACACAATCCGTTGAAGGTTCACATGGACAGACAGACACATGAGTGCCAAGAATGCGGTCGGAGATTCACACAAAAGACAAGCTTACTAAGGCATTGTCAAAACTTGCACATGACTGTAAAAAAATACAGTTGCCGTCGTAAAAGAATTACGGCGAAACGGACATTGGTTAAACATGAAAGGACACACACGGGTGTAAAATCGTATGTGTACGAAAAATGCGATAAACCGTTTCACAGTAAAGAGGGTTCACTGGATCATAATGCAGTCAATTTGGCACGTAAGCCTCACACTTGTAAATCTTTCCAATGCAGTGTTTGTAGCAAGAGTTTTGCACTTAAAAGTTATCTTAATAAACACATGAAGATTCATAATGACGAAATTTATGAGTGCCACGTTTGCAAGAAGACATTTAGATTCAAACAGAATTTAAGCAGGCACATGTGGGCTGTACATTTGGGCCTTAAGTCAACGTCCACTGAGTGCGATATTTGCAAAAAGACATTTAAATTCAAAAGGAATTTACGCGAGCACATATCGATTGTACATTTGGGTTTTAAGTTTGACTGCGACATTTGCAAGAAGACATTTAAATACAAACAGAGTTTAAACAGGCACATGTCGGCTGTACATTTGGACTTTAAGTTTGACTGCGACATTTGCAAAAAGACATTTACACAAAAGCGATATATACGCCGGCACATGTTGGCTGTACATTTGGACTTTAAGTTTGACTGCGACATTTGCAAGACGACATTTAAATGCAAACAGAGTTTAAGGGAGCACATGTCGGTTGTCCATTTCAGCTTTAAGTTTGACTGCGACATTTGCATGAAGACATTTAAATACAAACAGAGTTTAAGGGAGCACATGTCGGTTGTACATTTGGGCTTTAAGATTGACTGCGAAATTTGCAAAAAGACATTTAAATACAAAACGAATTTAAGGGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTCAATACAAAAAGAGTTTAAGCGAGCACATGTCGCTTGTACATTTGGGCTTTAAGCTTGAGTGCGACATTTGCAAGAAGAGATTTAAATACAAAAAGAGTTTAAGCGAGCACATGTCGGCTGTACATTTGGACTTTAAGTTTGACTGCAACATTTGCAAGGAGACATTTAAATACAAGCGAGATATACGCCACCACATGTTGGCTGTACATTTGGGCTTTAAGTTTGCCTGCAACATTTGCAAGAAGACATTTAAATACAAAGCGTTTTTAAGGGAGCACATGTCGGCTGTACATTTGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGTATTTAAGCAGGCACATGTCGACTGTACATTCGAGCTTTAAGTTTGACTGCGACCTTTGCAAGAAGACATTTAAATACAAAGAGAGTTTAAGGGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCGACATTTGCAAGAAGACATTTAAATACAAAGCAAGTTTTAGGGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCGACATTTGCAAGAAGAAATTTAAATACAAAAAGAGTTTAAGCAGGCACATATCGGTTATACATTTGGACTTTAAGCCAACACCCACTTAG
- Protein Sequence
- MMGYVVPFADDTAPVTDFVPSKDDKIYTICDECIEKLHVSTEFKNCVLACKKNACWRGHCRARLDGGTAMTPDMKQGPLIADNIKFETDEMDNNEESSINNLLDGEFNEDVRNENSRINNLLDEEFNKNVRNEDSSINNFLEEFNEDVKNEDSIINNLLDEEFNENVRNEDSSINNFIEEEFNEDVKNEDSSINNFLEEEFNEDVRNEDTSINKILDEESIEDVRNEDSSINNFIEEEFNEDVKNEDSSINNFLEEEFNEDVRNEDTSINKILDEESIEDVRNEDSSINKVLDEEFIEDVRNEDSSINKVLDEGFNEDVRNEDSSINKVSDEEFIEDVRNEDTSINKVLDEEFNEESEMKSDETFSDAGVGLRKASEIHEYKCTICNKTFKRKVNLENHVKTHDGSKRQTCPEILSNKRENAKHNPLKVHMDRQTHECQECGRRFTQKTSLLRHCQNLHMTVKKYSCRRKRITAKRTLVKHERTHTGVKSYVYEKCDKPFHSKEGSLDHNAVNLARKPHTCKSFQCSVCSKSFALKSYLNKHMKIHNDEIYECHVCKKTFRFKQNLSRHMWAVHLGLKSTSTECDICKKTFKFKRNLREHISIVHLGFKFDCDICKKTFKYKQSLNRHMSAVHLDFKFDCDICKKTFTQKRYIRRHMLAVHLDFKFDCDICKTTFKCKQSLREHMSVVHFSFKFDCDICMKTFKYKQSLREHMSVVHLGFKIDCEICKKTFKYKTNLREHMSAVHSGFKFDCNICKKTFQYKKSLSEHMSLVHLGFKLECDICKKRFKYKKSLSEHMSAVHLDFKFDCNICKETFKYKRDIRHHMLAVHLGFKFACNICKKTFKYKAFLREHMSAVHLGFKFDCNICKKTFKYKKYLSRHMSTVHSSFKFDCDLCKKTFKYKESLREHMSAVHSGFKFDCDICKKTFKYKASFREHMSAVHSGFKFDCDICKKKFKYKKSLSRHISVIHLDFKPTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387787;
- 90% Identity
- iTF_01387787;
- 80% Identity
- iTF_01387787;