Smyo010957.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000625.1:33136-38507[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0033 4 7.7 1.0 18 38 382 399 377 405 0.79 2 18 0.42 5.1e+02 1.0 2.5 8 38 427 454 420 460 0.78 3 18 3.8 4.6e+03 -2.1 0.8 15 29 522 536 516 544 0.74 4 18 0.0097 12 6.2 4.8 5 43 541 574 535 575 0.89 5 18 0.002 2.4 8.4 1.1 12 43 577 605 575 606 0.86 6 18 0.0067 8.1 6.7 0.8 16 43 609 633 607 634 0.81 7 18 0.2 2.4e+02 2.0 2.3 14 29 635 650 627 662 0.75 8 18 1.9 2.3e+03 -1.1 2.4 15 40 664 686 655 690 0.76 9 18 0.005 6.1 7.2 1.1 16 42 693 716 684 718 0.82 10 18 7.5e-06 0.0091 16.2 0.4 16 44 721 746 719 746 0.92 11 18 0.0016 2 8.7 0.3 16 40 749 770 747 774 0.80 12 18 0.0076 9.2 6.6 1.0 16 43 777 801 775 802 0.85 13 18 0.074 89 3.4 3.1 15 30 804 819 796 830 0.77 14 18 0.017 21 5.4 3.0 16 39 833 853 823 858 0.77 15 18 0.00037 0.45 10.8 4.5 16 44 861 886 852 886 0.91 16 18 0.0046 5.6 7.3 0.3 15 43 888 913 886 914 0.85 17 18 0.013 16 5.8 1.5 15 43 916 941 908 942 0.81 18 18 0.0046 5.6 7.3 1.4 16 39 945 965 939 969 0.84
Sequence Information
- Coding Sequence
- ATGATGGGATATGTCGTTCCATTTGCAGACGACACAGCTCCGGTCACAGATTTTGTGCCCTCCAAAGACGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACACGTCTCGACGGAATTTAAGAATTGTGTACTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGCTCGACTTGACGGGGGCACTGCAATGACCCCAGATATGAAACAAGGACCATTAATAGCAGACAACATCAAATTTGAAACAGATGAGATGGACAACAATGAAGAATCAAGTATAAATAATTTATTAGATGGAGAGTTTAATGAAGATGTCAGAAATGAAAACTCAAGAATAAATAATTTATTAGATGAAGAGTTCAATAAAAATGTCAGAAATGAAGACTCAAGTATAAATAATTTTTTAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAATTATAAATAATTTATTAGATGAAGAGTTCAATGAAAATGTCAGAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGCATAAATAATTTTTTAGAAGAAGAGTTCAATGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGATTTTAGATGAAGAGTCCATTGAAGATGTCAGAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGCATAAATAATTTTTTAGAAGAAGAGTTCAATGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGATTTTAGATGAAGAGTCCATTGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTTAGATGAAGAGTTCATTGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTTAGATGAAGGGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCATTGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGGTTTTAGATGAAGAGTTTAATGAAGAGAGTGAAATGAAATCAGATGAAACCTTTAGTGATGCTGGTGTCGGTTTAAGAAAAGCAAGCGAAATACATGAGTATAAATGCACCATTTGCAATAAAACTTTTAAACGCAAAGTGAACCTAGAAAATCATGTCAAAACTCACGACGGCTCTAAACGCCAAACATGTCCAGAAATACTATCGAATAAGAGAGAGAACGCGAAACACAATCCGTTGAAGGTTCACATGGACAGACAGACACATGAGTGCCAAGAATGCGGTCGGAGATTCACACAAAAGACAAGCTTACTAAGGCATTGTCAAAACTTGCACATGACTGTAAAAAAATACAGTTGCCGTCGTAAAAGAATTACGGCGAAACGGACATTGGTTAAACATGAAAGGACACACACGGGTGTAAAATCGTATGTGTACGAAAAATGCGATAAACCGTTTCACAGTAAAGAGGGTTCACTGGATCATAATGCAGTCAATTTGGCACGTAAGCCTCACACTTGTAAATCTTTCCAATGCAGTGTTTGTAGCAAGAGTTTTGCACTTAAAAGTTATCTTAATAAACACATGAAGATTCATAATGACGAAATTTATGAGTGCCACGTTTGCAAGAAGACATTTAGATTCAAACAGAATTTAAGCAGGCACATGTGGGCTGTACATTTGGGCCTTAAGTCAACGTCCACTGAGTGCGATATTTGCAAAAAGACATTTAAATTCAAAAGGAATTTACGCGAGCACATATCGATTGTACATTTGGGTTTTAAGTTTGACTGCGACATTTGCAAGAAGACATTTAAATACAAACAGAGTTTAAACAGGCACATGTCGGCTGTACATTTGGACTTTAAGTTTGACTGCGACATTTGCAAAAAGACATTTACACAAAAGCGATATATACGCCGGCACATGTTGGCTGTACATTTGGACTTTAAGTTTGACTGCGACATTTGCAAGACGACATTTAAATGCAAACAGAGTTTAAGGGAGCACATGTCGGTTGTCCATTTCAGCTTTAAGTTTGACTGCGACATTTGCATGAAGACATTTAAATACAAACAGAGTTTAAGGGAGCACATGTCGGTTGTACATTTGGGCTTTAAGATTGACTGCGAAATTTGCAAAAAGACATTTAAATACAAAACGAATTTAAGGGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTCAATACAAAAAGAGTTTAAGCGAGCACATGTCGCTTGTACATTTGGGCTTTAAGCTTGAGTGCGACATTTGCAAGAAGAGATTTAAATACAAAAAGAGTTTAAGCGAGCACATGTCGGCTGTACATTTGGACTTTAAGTTTGACTGCAACATTTGCAAGGAGACATTTAAATACAAGCGAGATATACGCCACCACATGTTGGCTGTACATTTGGGCTTTAAGTTTGCCTGCAACATTTGCAAGAAGACATTTAAATACAAAGCGTTTTTAAGGGAGCACATGTCGGCTGTACATTTGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGTATTTAAGCAGGCACATGTCGACTGTACATTCGAGCTTTAAGTTTGACTGCGACCTTTGCAAGAAGACATTTAAATACAAAGAGAGTTTAAGGGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCGACATTTGCAAGAAGACATTTAAATACAAAGCAAGTTTTAGGGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCGACATTTGCAAGAAGAAATTTAAATACAAAAAGAGTTTAAGCAGGCACATATCGGTTATACATTTGGACTTTAAGCCAACACCCACTTAG
- Protein Sequence
- MMGYVVPFADDTAPVTDFVPSKDDKIYTICDECIEKLHVSTEFKNCVLACKKNACWRGHCRARLDGGTAMTPDMKQGPLIADNIKFETDEMDNNEESSINNLLDGEFNEDVRNENSRINNLLDEEFNKNVRNEDSSINNFLEEFNEDVKNEDSIINNLLDEEFNENVRNEDSSINNFIEEEFNEDVKNEDSSINNFLEEEFNEDVRNEDTSINKILDEESIEDVRNEDSSINNFIEEEFNEDVKNEDSSINNFLEEEFNEDVRNEDTSINKILDEESIEDVRNEDSSINKVLDEEFIEDVRNEDSSINKVLDEGFNEDVRNEDSSINKVSDEEFIEDVRNEDTSINKVLDEEFNEESEMKSDETFSDAGVGLRKASEIHEYKCTICNKTFKRKVNLENHVKTHDGSKRQTCPEILSNKRENAKHNPLKVHMDRQTHECQECGRRFTQKTSLLRHCQNLHMTVKKYSCRRKRITAKRTLVKHERTHTGVKSYVYEKCDKPFHSKEGSLDHNAVNLARKPHTCKSFQCSVCSKSFALKSYLNKHMKIHNDEIYECHVCKKTFRFKQNLSRHMWAVHLGLKSTSTECDICKKTFKFKRNLREHISIVHLGFKFDCDICKKTFKYKQSLNRHMSAVHLDFKFDCDICKKTFTQKRYIRRHMLAVHLDFKFDCDICKTTFKCKQSLREHMSVVHFSFKFDCDICMKTFKYKQSLREHMSVVHLGFKIDCEICKKTFKYKTNLREHMSAVHSGFKFDCNICKKTFQYKKSLSEHMSLVHLGFKLECDICKKRFKYKKSLSEHMSAVHLDFKFDCNICKETFKYKRDIRHHMLAVHLGFKFACNICKKTFKYKAFLREHMSAVHLGFKFDCNICKKTFKYKKYLSRHMSTVHSSFKFDCDLCKKTFKYKESLREHMSAVHSGFKFDCDICKKTFKYKASFREHMSAVHSGFKFDCDICKKKFKYKKSLSRHISVIHLDFKPTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387798;
- 90% Identity
- iTF_01387798;
- 80% Identity
- iTF_01387798;