Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000772.1:41094-57710[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00031 0.018 15.7 2.6 1 23 427 449 427 449 0.97

2 20 0.026 1.5 9.6 2.1 1 20 455 474 455 477 0.94

3 20 0.00013 0.0074 16.9 2.2 1 23 496 518 496 518 0.98

4 20 3.1e-05 0.0018 18.8 4.4 1 23 524 546 524 546 0.99

5 20 3.9e-05 0.0023 18.5 5.3 1 23 552 574 552 574 0.97

6 20 7.5e-06 0.00044 20.7 8.3 1 23 580 602 580 602 0.97

7 20 1.7e-06 0.0001 22.8 2.5 1 23 608 630 608 630 0.97

8 20 0.00011 0.0063 17.1 6.7 1 23 636 658 636 658 0.97

9 20 0.00011 0.0062 17.1 6.5 1 23 664 686 664 686 0.97

10 20 5.1e-07 3e-05 24.4 1.9 1 23 692 714 692 714 0.98

11 20 5.2e-05 0.0031 18.1 7.9 1 23 720 742 720 742 0.98

12 20 8.8e-06 0.00051 20.5 6.4 1 23 748 770 748 770 0.98

13 20 6.8e-07 4e-05 24.0 5.5 1 23 776 798 776 798 0.98

14 20 1.6e-05 0.00096 19.7 7.1 1 23 804 826 804 826 0.97

15 20 6.1e-05 0.0036 17.9 6.2 1 23 832 854 832 854 0.98

16 20 3.2e-06 0.00019 21.9 6.0 1 23 860 882 860 882 0.98

17 20 0.0005 0.029 15.0 8.7 1 23 888 910 888 910 0.97

18 20 1.6e-06 9.6e-05 22.8 6.1 1 23 916 938 916 938 0.98

19 20 0.00042 0.025 15.2 0.1 1 23 945 967 945 967 0.97

20 20 0.0015 0.087 13.5 3.1 1 23 977 999 977 999 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00031	0.018	15.7	2.6	1	23	427	449	427	449	0.97
2	20	0.026	1.5	9.6	2.1	1	20	455	474	455	477	0.94
3	20	0.00013	0.0074	16.9	2.2	1	23	496	518	496	518	0.98
4	20	3.1e-05	0.0018	18.8	4.4	1	23	524	546	524	546	0.99
5	20	3.9e-05	0.0023	18.5	5.3	1	23	552	574	552	574	0.97
6	20	7.5e-06	0.00044	20.7	8.3	1	23	580	602	580	602	0.97
7	20	1.7e-06	0.0001	22.8	2.5	1	23	608	630	608	630	0.97
8	20	0.00011	0.0063	17.1	6.7	1	23	636	658	636	658	0.97
9	20	0.00011	0.0062	17.1	6.5	1	23	664	686	664	686	0.97
10	20	5.1e-07	3e-05	24.4	1.9	1	23	692	714	692	714	0.98
11	20	5.2e-05	0.0031	18.1	7.9	1	23	720	742	720	742	0.98
12	20	8.8e-06	0.00051	20.5	6.4	1	23	748	770	748	770	0.98
13	20	6.8e-07	4e-05	24.0	5.5	1	23	776	798	776	798	0.98
14	20	1.6e-05	0.00096	19.7	7.1	1	23	804	826	804	826	0.97
15	20	6.1e-05	0.0036	17.9	6.2	1	23	832	854	832	854	0.98
16	20	3.2e-06	0.00019	21.9	6.0	1	23	860	882	860	882	0.98
17	20	0.0005	0.029	15.0	8.7	1	23	888	910	888	910	0.97
18	20	1.6e-06	9.6e-05	22.8	6.1	1	23	916	938	916	938	0.98
19	20	0.00042	0.025	15.2	0.1	1	23	945	967	945	967	0.97
20	20	0.0015	0.087	13.5	3.1	1	23	977	999	977	999	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAACACCACAGTATTAATACGGGTGGTGGCCAACCGCCTGGAAATTCTGAGAATCACAGTCAGAGAGTTCAGGTGGCTCAACAGCAGCAGCCAACGAATAGCTTGACACCGACAACATCTGCTACTGACCTACGAGTAAACTCAGCTGCCGTAAATGTCGCTTTGTCTAGCGTCGCTAAATATTGGGTGTTTACTAATTTATTTCCTGGTCCTATACCACAAGTATCCGTGTATGGGTTGCCCACTGGAACAAGAATTGAGAATGGAAAGCCTGTTCAGGATCTCGGACAGCATGCAAGTATATTAAATGGTGACCCAAATATCATACTTGGACATCATGCAGGTCAATCACAAGTTACTGTGTCGGCCGCAGGTCCACAACAGATTCCCGTTTCACAGATTATTGCTACTCAATCTGGACAAACACATGAAGCATTGGTGGCGCACAGTCAAGCTCAAGAGCTCGTCAACGCGCAGCAGGGGAACGGGAATCAGGCTCAGGTCTCCGCAGGCCAGAATCTCCACCAGCAGGTACCCAATAATCGGGTCGAATTTGTTCAACACCATAACATTGATATGGGACACCATTCCCAGCAACACATAATGCAACAACAACTAATGACGTCATCACGTTCTGACCACGCTAACCAACAGATCCAATTGACGGTCAGTGAGGACGGAATTGTCACTGTGGTCGAACCTGGTGGTAGTAACAAACTGGTTGACAAGGAGGAACTTCATGAGGCCATAAAGATGCCATCTGATCACACCCTTACCGTTCACCAGTTGCAACAAATTGTTGGACAACAGGTGTTAGACAGTGTGGTACGGATTGAACAGGCCACAGGTGAACCGGCCAACATTCTCGTCACTCACAACCCAGATGGCACAACTTCCATAGAAGCCAGCGCCAGCGATCCACTCATTGTGAAGGACGAGAAAGCGTCTAACAAAATCGAGACGGCACAGTTTGCTATACCAGCGGAAATTAAGGACATCAAAGGCATTGATTTGAAGAGTGTGGGAACAATGGGTATGGAGGGAGCCGTAGTGAAGATATCTGCAGGGACTTCTGAACACGATTTCCACCAAATGTACAAAGTGAATGTGGAGGACTTGTCTCAGTTGCTAGCGTACCACGAAGTGTTTGGAAAACTTAACTCCGAGGGACAGCAGCAGGCTAAGGTGATGGAAGGCATTGAGGTGGAAGTGCCTCCACCTTCCACAAGCGCGGCGATATCGGAAACAGAGTCCTCCTCGCCGGGACACCACTCGTGCGACCTCTGTGGGAAAATATTCCAGTTCAGATATCAACTCATTGTTCATAGGCGTTACCATGGAGAACGCAAACCGTTCACGTGCCAAGTGTGCGGCTCGGCGTTCGCTAATCATGTCGAACTATCCCGACATGGGAAATGTCATCTAGCGGGAGATGCAGCCGAACGTCACGCCAAAAGGGTGTCCCAGGATAAGCCGTACGTTTGCGCTACTTGCCTCAAAACTTTCGCAAGGAAGGAACATCTCGACAACCACACTCGCAGTCACACAGGGGAGACACCGTACAGATGCCAGTACTGTGCGAAATCGTTCACCCGAAAAGAACACATGGTGAACCACGTACGGAAACACACGGGCGAAACGCCCCATCGCTGCGACATATGCAAGAAGTCTTTCACGCGCAAGGAGCACTTCATGAACCATGTCATGTGGCACACGGGTGAAACGCCGCACCATTGCCAAATATGTGGCAAGAAGTACACTAGGAAGGAGCATTTAACGAACCATATGCGCTCGCACACGAACGATACGCCCTTCCGATGTGCGATGTGCGGCAAGTCATTCACCCGAAAGGAACATTACACCAACCACATACTGTGGCACACCGGCGAGACGCCCCACCGCTGCGATTTCTGCTCGAAGACGTTCACCCGCAAGGAGCACTTGCTGAACCACGTGAGGCAGCACACGGGCGAATCGCCCCACCGCTGCAACTTCTGCTCCAAGTCCTTCACGCGCCGCGAACACCTCGTCAATCACGTGCGTCAACACACGGGCGAAACGCCCTTCCAGTGCGGCTACTGTCCTAAGGCATTCACCAGGAAGGACCACTTGGTGAATCATGTGCGTCAGCACACCGGCGAGTCACCGCACAAGTGCTCATTCTGCACGAAATCTTTCACGCGCAAAGAGCACCTAACGAACCACGTGCGACAGCATACGGGCGAATCACCCCACCGGTGTTCGTACTGTGCCAAATCCTTTACCAGGAAGGAGCATTTGACCAATCACATCAGACAACACACGGGTGAAACTCCGCACAAGTGCACATACTGTCCGAAGGCGTTCTCCCGTAAGGAGCATCTCACCAACCATATCCGGCAGCACACCGGCGACTCTCCGCACGTGTGCTCCTACTGTCAGAAGTGCTTCTCGCGCAAGGAGCACCTCGTCATACACATAAGGCAACACACAGGCGAGACGCCGTACAAATGCACGTTTTGTGCGAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACATCCACCTTCACACGGGAGAGACGCCCCACAAATGCCCCTTCTGCACCAAGACCTTCTCCCGGAAGGAGCATCTCACCAACCACGTCAGAATCCATACAGGAGAATCTCCGCATCGGTGCGAGTTCTGTCAGAAGACCTTCACTCGGAAAGAGCATCTCACGAACCACTTCAAGCAGCATACTGGCAACACACCACACACTTGCAAAGTCTGCTCAAAGTCTTTCACTCGCAAGGAGCATCTCGCTACTCATATGAGGTCTCATAGTTGCGGGGAGCGTCCTTACATTTGTGGTGAATGTGGAAAATCATTCCCACTTAAAGGAAATTTATTGTTCCATGTGCGATCGCACAAGAACACTAATGCAGACAGCAAATTCTTCCGGTGTGACGTCTGCAGTAAAGAATTCTTATCGAAAACTCACCTGGCGAGCCACCGACGCATGCACGAGGGAGGTGAGGCGGGCGCCGAAGATCCGGACGAAGCACACTGTGATAATAATTGTGACAAGGAGGAACCCGACACCAAGCAGGAATTAAGAACTGTGGTCACGGAAAACACCTCTGTTCCCGTTGAAACCAATGACGTGACGCAAAATCCTCAAGCCAATACAAACACTGTGATGCAAATTGCCAGCCAGGCGGTTCGATCGGCGCCTCCGGCCGCGGGTACTGTGGGCAATGTGGGCACTGTGGGCAATGTGGGCGCTGTGCCAGGCGCATTCCCCCACGCGACCGCACCTCAGCATCACACGAGCACCCACCACCCGGTCACAGTCAACTACTAG
Protein Sequence: MNPEHHSINTGGGQPPGNSENHSQRVQVAQQQQPTNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQHASILNGDPNIILGHHAGQSQVTVSAAGPQQIPVSQIIATQSGQTHEALVAHSQAQELVNAQQGNGNQAQVSAGQNLHQQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMTSSRSDHANQQIQLTVSEDGIVTVVEPGGSNKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASASDPLIVKDEKASNKIETAQFAIPAEIKDIKGIDLKSVGTMGMEGAVVKISAGTSEHDFHQMYKVNVEDLSQLLAYHEVFGKLNSEGQQQAKVMEGIEVEVPPPSTSAAISETESSSPGHHSCDLCGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANHVELSRHGKCHLAGDAAERHAKRVSQDKPYVCATCLKTFARKEHLDNHTRSHTGETPYRCQYCAKSFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLTNHMRSHTNDTPFRCAMCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPKAFSRKEHLTNHIRQHTGDSPHVCSYCQKCFSRKEHLVIHIRQHTGETPYKCTFCAKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHFKQHTGNTPHTCKVCSKSFTRKEHLATHMRSHSCGERPYICGECGKSFPLKGNLLFHVRSHKNTNADSKFFRCDVCSKEFLSKTHLASHRRMHEGGEAGAEDPDEAHCDNNCDKEEPDTKQELRTVVTENTSVPVETNDVTQNPQANTNTVMQIASQAVRSAPPAAGTVGNVGTVGNVGAVPGAFPHATAPQHHTSTHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386021;
90% Identity: iTF_01386021;
80% Identity: -