Sfor013879.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000109.1:577615-583482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.9 1.6e+02 3.2 0.0 1 23 238 260 238 260 0.95 2 12 0.089 5.1 8.0 2.9 2 23 268 289 267 289 0.97 3 12 0.008 0.45 11.3 0.1 1 23 293 316 293 316 0.96 4 12 4.3e-06 0.00024 21.6 3.9 1 23 321 343 321 344 0.94 5 12 6.2e-06 0.00035 21.1 2.0 1 23 350 372 350 372 0.99 6 12 0.00027 0.015 15.9 0.4 2 23 386 407 385 407 0.97 7 12 0.28 16 6.4 0.7 2 20 420 438 419 442 0.89 8 12 9.2e-06 0.00052 20.5 1.3 1 23 450 473 450 473 0.98 9 12 0.012 0.7 10.7 0.7 1 23 480 503 480 503 0.95 10 12 0.00059 0.033 14.9 0.1 3 23 521 544 519 544 0.87 11 12 3e-05 0.0017 18.9 3.1 1 23 553 575 553 575 0.97 12 12 4.4e-05 0.0025 18.4 0.3 1 23 580 603 580 603 0.95
Sequence Information
- Coding Sequence
- ATGTTCTGGGACCCGAAACATCCCTTGTATTTAAATAAAATCAAACGAGACGACTGTTGGAGGCGGATTTCTTTAGAAATGAAGTTGCCCGTGCGCGAATTGAAGAAAAAAATGGAATCCCTTTTAGGCTCCTATCGTCGGGAGAAGAGCAGAGAGAAAAGAAGCCTCATCACCGGTTCAGGTGATGATATTTATATATCAAAGTGGTTTGCATATCCTTACTTTGATTTCATGAAGAATAAAAATGAACCTCAAGATGACATTCAAGATACAATACCAGTGGACAATCAGCAATCGCCTCAAACTGTAGGCGAGATACTTAGTCAAGATACTTCATTGACCCAATCAAAACTTTCTCAATCAACCACAAATACAGAAACACCTCAAACGTTTCAAGAAGAAGAAAATATAGAAGATGCATCAACATGTACGAGTACAATAACATCACCTCATATAAAGCATAAAAAGCCAAATTCCGCAAAAATTATGCTTCAATATCTGAAAAAGTTTTCTGACGAGGCAAACGATCCATATATCTCTTTTGGAAAGTACATAGCGAACGAATTAAGAAAAGTTAACGGTGCGATCGCGTCAGAGGACAGATTGGTGTTCTCGGCGGAGGTGCTCGCGCGGGTGGAGATCGTGCACATCACGGAGGAGGAGCGGCTCGCCGAGCACGCGACGCTGCTCGCCGCGCGCAGCCACATGCCCTTCCGCTGCGAGCCGTGCGCGCTCGGATTCGTCACCGAGCGCGCGTACGCAACGCACGAGCGCGCGCACGAGGGCGGCGACGAGGTGATGCGCTGTCGCGTGTGTCTGTGCCGCGTGCGCGACAAGTCCGCGCTCACGCAGCACCGGCTGCGCCACTACCGCCGCTACCGCTGCCGCGACTGCGACGCTCGGTTCCGCGAGCGTGACGCCGCCGCCACGCACGTGATGCGCGAGCACGAGCGCGAGGCGTTCGCGTGCGAGCACTGCGAGCGCGTGTTCCGCCGCCCGGCGCATCTGACGCGCCACATAGAGCAGCACCACACTCGCTCGCAGCAGTTCGAGTGCCCGCAGTGCGGCCGCATCTTCTACCAGAAGGACGCACTGCGCTGTCACATGCGCACGCACGACACGTCGGTGCCGGTGCGAGCGCGCGTGACGCCGCTGCGCTGCGAGACGTGCGAGCGCACTTTCGGCAGCCGGCCTGCCTTACTGCGCCACCGACTGACGCACGAGGAGCTGCCGGCGGCGGGCGCGTTGGACCGCGTGCGCTGTCCGCTGTGCCGCTTCGCCTGTCCGGACGCGGACGCGCTGCGTGAGCACTTCGTGCACGAGCATCCGCTCGAGCGCGCGGTGAACTTCGTGTGCACGCTGTGCGACCGCGTGTGCGCGTCGCGAGCGCTCTTGCGCAACCACATGCGCCGCATGCACACAGACAGGACCAAGAAGTTCCAGTGTGATTACTGCCAACGGCTGTACCTGACTAAAGGCGACCTGCGCACGCACATCTCGTGGTCGCACATGCGCCGCAGCGCGCTCGGGCCCGCCTCGCCCGCGGGAGGGGGACACGCGTGCCTCGAGCCGGGCTGCGACCGCGTATTCCGCACCCCAGCTCTGCTCAAGGTGCACACGGCGCGCGAGCACCGCCTCGAGCCACCCGCGCGCGTGCACGTGTGCCACACGTGCGGCAAGGGCTTCGCCACGGGGCAGACGCTCACACGGCACCGGCGCGTGCACGAGGACGTCAAGTTCCCGTGCAAGGAGTGCGGCGTCGCGTTCAAGACGCCCTCGTACGTCAAGGTGCACTACCAACTGAGGCACCTCAACATGACGCGCGCGCAGATCCGCGAGGAGCGCGCGCGGAAGGCGCAGCCCGCGAAGCCTCTCTTCGTGGAGGTGAAGCGCGAGTGCCAGGAGGAGGAGGAGGAGGAGCACGAGGAGGAGGAGGAGAGTCCGCCTCAGTTCACGCACGTCATCATCAAGCAGGAAGTGGAGCCGTAG
- Protein Sequence
- MFWDPKHPLYLNKIKRDDCWRRISLEMKLPVRELKKKMESLLGSYRREKSREKRSLITGSGDDIYISKWFAYPYFDFMKNKNEPQDDIQDTIPVDNQQSPQTVGEILSQDTSLTQSKLSQSTTNTETPQTFQEEENIEDASTCTSTITSPHIKHKKPNSAKIMLQYLKKFSDEANDPYISFGKYIANELRKVNGAIASEDRLVFSAEVLARVEIVHITEEERLAEHATLLAARSHMPFRCEPCALGFVTERAYATHERAHEGGDEVMRCRVCLCRVRDKSALTQHRLRHYRRYRCRDCDARFRERDAAATHVMREHEREAFACEHCERVFRRPAHLTRHIEQHHTRSQQFECPQCGRIFYQKDALRCHMRTHDTSVPVRARVTPLRCETCERTFGSRPALLRHRLTHEELPAAGALDRVRCPLCRFACPDADALREHFVHEHPLERAVNFVCTLCDRVCASRALLRNHMRRMHTDRTKKFQCDYCQRLYLTKGDLRTHISWSHMRRSALGPASPAGGGHACLEPGCDRVFRTPALLKVHTAREHRLEPPARVHVCHTCGKGFATGQTLTRHRRVHEDVKFPCKECGVAFKTPSYVKVHYQLRHLNMTRAQIREERARKAQPAKPLFVEVKRECQEEEEEEHEEEEESPPQFTHVIIKQEVEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388772; iTF_01386070;
- 90% Identity
- -
- 80% Identity
- -