Sand013975.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000904.1:71607-79624[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.5 90 4.2 0.1 1 23 376 398 376 398 0.96 2 12 0.11 7.1 7.7 2.9 2 23 406 427 405 427 0.97 3 12 0.01 0.63 11.0 0.1 1 23 431 454 431 454 0.96 4 12 8e-06 0.0005 20.7 3.8 1 23 459 481 459 482 0.94 5 12 2.7e-06 0.00017 22.2 2.0 1 23 488 510 488 510 0.99 6 12 0.00034 0.021 15.6 0.4 2 23 524 545 523 545 0.97 7 12 0.15 9.3 7.3 0.2 2 23 558 580 557 580 0.91 8 12 1.3e-05 0.0008 20.1 1.2 1 23 588 611 588 611 0.98 9 12 0.016 0.98 10.4 0.7 1 23 618 641 618 641 0.95 10 12 0.00075 0.046 14.6 0.1 3 23 659 682 657 682 0.87 11 12 3.8e-05 0.0023 18.6 3.1 1 23 691 713 691 713 0.97 12 12 5.7e-05 0.0035 18.1 0.3 1 23 718 741 718 741 0.95
Sequence Information
- Coding Sequence
- ATGCTGCCGCCAGATGGGCTGCCCAAATGGGCTGCCCAAATGACTAGGAAAGTAGTGGCAGTGCCATTAGCATTGATGGAAGGCTCGCAAGCCAATGAGTGTATACCTTTCCTCGATAACGTGAAGACCGAAGCTGGGACTGAACTCGAAGATCACAACAGCGTCTTGAACGGTGACGAGCCCGTCGAGAATGTTTTAGTTTCAATTGAACCAATTATATTTGATGATGAAGACGAAATAGAACTGAATCACCAGGAGAGACCGCAATCAGACTTTGAAATGGAAGGAGACCAAAACAATATTTCATATGAGGACTATGAGCCTAAATCCAAGAAAACGAAGAAAAGAGATAAAAAAGCAAAACCATGCGTGATTCATCCGAAAAATATCCAAGAGCAGTCGATTCGACTTATCGCTTTGTACAGTCGTTACAATATGTTCTGGGATCCCAAACATCCCTTGTATTTAAATAAAATCAAGCGAGACGACTGTTGGAGGCTCTGGAGGCGGATTTCGTTAGAAATGAAGTTGCCCGTGTGCGAGTTGAAGAAAAAAATGGAATCCTTGTTGGGCTCCTATCGTCGGGAGAAGAGCAGAGAAAAGAGAAGTCTCCTCACCGATTCAGGTGATGATATTTATATATCAAAGTGGTTTGCATATCCTTACTTTGATTTCATGAGGAACAAAAATGAACCTCAGGATACTTTTTCAATGGAGGAAACTGTTGACCTAGTTATAGATACACAAGACACTTCATTGACTCAATCACAAGTTTCTCAATCAGAAACACTTCAAAAATTACATGATGAAGAAAATATAGAAGATGCATCAACATTTACAATATCGTCACCTCATGAAAAGCATAAAAAGCCAAATTCCCCAGAAATGATGCTTCGATATCTGAAAAAGTGTTCCGACGAGGCCAACGATGCCAACGATCCGTATGTCTCTTTTTTTTGGAAAGCACATAGCAAACGAATTAAGAAATTAACGGTGGCGATCGCGTCAGAGGACAGATTGGTGTTCTCGGCGGAGGTGCTCGCGCGGGTGGAGATCGTGCACATCTCGGAGGAGGAGCGGCTCGCCGAGCACGCGACGCTGCTCGCCGCGCGCAGCCACATGCCCTTCCGCTGCGAGCCGTGCGCGCTCGGGTTCGTCACCGAGCGCGCGTACACGACGCACGAGCGCGCGCACGAGGGCGGCGACGACGTGATGCGCTGTCGCGTGTGCCTGTGCCGCGTGCGCGACAAGTCCGCGCTCACGCAGCACCGCTTGCGCCACTACCGCCGCTACCGCTGCCGCGACTGCGACGCTCGGTTCCGCGAGCGCGACGCCGCCGCCACGCACGTGATGCGCGAGCACGAGCGCGAGGCGTTCGCGTGCGAGCACTGCGAGCGCGCGTTCCGCCGCCCCGCGCATCTGACGCGCCACATAGAGCAGCACCACACGCGCTCTCAGCAGTTCGAGTGCCCGCAGTGCGGCCGCGTCTTCTACCAGAAGGACGCGCTGCGCTGCCACATGCGCACGCACGACGCTTCGGTGCCGGTGCGCGCGCGCGTGACGCCGCTGCGCTGCGAGACGTGCGAGCGAACGTTCGGCAGCCGGCCCGCGCTGCTGCGCCACCGGCTGACGCACGAGGAGCTGCCGGCGGCGGGCGCGCTGGACCGCGTGCGCTGTCCGCTGTGCCGCTTCGCGTGTCCGGACGCGGACGCGCTGCGCGAGCACTTCGTGCGCGAGCATCCGCTCGAGCGCGCGGTGAACTTCGTGTGCTCGCTGTGCGACCGCGTGTGCGCGTCGCGAGCGCTCTTGCGCAACCACATGCGCCGCATGCACACGGACAGGACCAAGAAGTTCCAGTGCGACTACTGCCAACGGCTGTACCTGACGAAGGGCGACCTGCGCACGCACATCTCGTGGTCGCACATGCGGCGCAGCGCGCTCGGGCCCGCGTCCCCCGCGGGCGGGGGGCACGCGTGCCTCGAGCCGGGCTGCGACCGCGTGTTCCGCACGCCGGCGCTGCTCAAGGTGCACACGGCGCGCGAGCACCGGCTCGAGCCCCCCGCGCGGGTGCACGTGTGCCACACGTGCGGCAAGGGCTTCGCCACGGGCCAGACGCTGACGCGCCACCGGCGCGTGCACGAGGACGTCAAGTTCCCGTGCAAGGAGTGCGGCGTCGCCTTCAAGACGCCCTCCTACGTCAAAGTGCACTACCAGCTGAGGCACCTCAACATGACGCGCGCGCAGATCCGCGAGGAGCGCGCGCGGAGGGCGCAGCCCGCGAAACCGCTCTTCGTGGAGGTGAAGCGCGAGTGCGAGGAGGGTGAGGACGAGGAGGAGGGGGAGGAGGAGGAGGGGGAACAGGAGCATCATGAAGCGCCTCAGTTCACTCACGTCATCATCAAGCAGGAAGTGGAGCCGTAG
- Protein Sequence
- MLPPDGLPKWAAQMTRKVVAVPLALMEGSQANECIPFLDNVKTEAGTELEDHNSVLNGDEPVENVLVSIEPIIFDDEDEIELNHQERPQSDFEMEGDQNNISYEDYEPKSKKTKKRDKKAKPCVIHPKNIQEQSIRLIALYSRYNMFWDPKHPLYLNKIKRDDCWRLWRRISLEMKLPVCELKKKMESLLGSYRREKSREKRSLLTDSGDDIYISKWFAYPYFDFMRNKNEPQDTFSMEETVDLVIDTQDTSLTQSQVSQSETLQKLHDEENIEDASTFTISSPHEKHKKPNSPEMMLRYLKKCSDEANDANDPYVSFFWKAHSKRIKKLTVAIASEDRLVFSAEVLARVEIVHISEEERLAEHATLLAARSHMPFRCEPCALGFVTERAYTTHERAHEGGDDVMRCRVCLCRVRDKSALTQHRLRHYRRYRCRDCDARFRERDAAATHVMREHEREAFACEHCERAFRRPAHLTRHIEQHHTRSQQFECPQCGRVFYQKDALRCHMRTHDASVPVRARVTPLRCETCERTFGSRPALLRHRLTHEELPAAGALDRVRCPLCRFACPDADALREHFVREHPLERAVNFVCSLCDRVCASRALLRNHMRRMHTDRTKKFQCDYCQRLYLTKGDLRTHISWSHMRRSALGPASPAGGGHACLEPGCDRVFRTPALLKVHTAREHRLEPPARVHVCHTCGKGFATGQTLTRHRRVHEDVKFPCKECGVAFKTPSYVKVHYQLRHLNMTRAQIREERARRAQPAKPLFVEVKRECEEGEDEEEGEEEEGEQEHHEAPQFTHVIIKQEVEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386973;
- 90% Identity
- -
- 80% Identity
- -