Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000091.1:212193-219785[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.2e-05 0.00068 20.2 1.4 1 23 175 197 175 197 0.99

2 15 0.00014 0.0081 16.8 2.7 1 23 203 226 203 226 0.95

3 15 3.3e-06 0.00019 21.9 1.8 1 23 231 253 231 253 0.98

4 15 1.8e-05 0.001 19.6 1.3 2 23 286 308 285 308 0.94

5 15 8.3e-06 0.00047 20.7 1.0 1 23 316 339 316 339 0.95

6 15 8.3e-06 0.00047 20.7 1.0 1 23 347 370 347 370 0.95

7 15 8.3e-06 0.00047 20.7 1.0 1 23 378 401 378 401 0.95

8 15 0.00035 0.02 15.6 4.1 1 23 409 432 409 432 0.93

9 15 2.2e-05 0.0012 19.4 2.7 2 23 441 463 440 463 0.95

10 15 1.9e-06 0.00011 22.7 2.8 2 23 470 492 469 492 0.94

11 15 6.6e-06 0.00037 21.0 1.5 2 23 499 521 498 521 0.97

12 15 8.6e-07 4.9e-05 23.8 2.9 2 23 528 550 527 550 0.97

13 15 1.4e-05 0.00081 19.9 1.3 2 23 557 579 556 579 0.94

14 15 5.4e-07 3.1e-05 24.4 2.9 2 23 586 608 586 608 0.97

15 15 0.0001 0.0058 17.2 0.7 2 23 619 641 618 641 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.2e-05	0.00068	20.2	1.4	1	23	175	197	175	197	0.99
2	15	0.00014	0.0081	16.8	2.7	1	23	203	226	203	226	0.95
3	15	3.3e-06	0.00019	21.9	1.8	1	23	231	253	231	253	0.98
4	15	1.8e-05	0.001	19.6	1.3	2	23	286	308	285	308	0.94
5	15	8.3e-06	0.00047	20.7	1.0	1	23	316	339	316	339	0.95
6	15	8.3e-06	0.00047	20.7	1.0	1	23	347	370	347	370	0.95
7	15	8.3e-06	0.00047	20.7	1.0	1	23	378	401	378	401	0.95
8	15	0.00035	0.02	15.6	4.1	1	23	409	432	409	432	0.93
9	15	2.2e-05	0.0012	19.4	2.7	2	23	441	463	440	463	0.95
10	15	1.9e-06	0.00011	22.7	2.8	2	23	470	492	469	492	0.94
11	15	6.6e-06	0.00037	21.0	1.5	2	23	499	521	498	521	0.97
12	15	8.6e-07	4.9e-05	23.8	2.9	2	23	528	550	527	550	0.97
13	15	1.4e-05	0.00081	19.9	1.3	2	23	557	579	556	579	0.94
14	15	5.4e-07	3.1e-05	24.4	2.9	2	23	586	608	586	608	0.97
15	15	0.0001	0.0058	17.2	0.7	2	23	619	641	618	641	0.94

Sequence Information

Coding Sequence: ATGGCTGCAATATTAAACCAAACACAAACACCGTTATGCAGATGTTGTCACAAGAATGGCATATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGCTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAATGATGTCCCAATTAAAATAGAGAAAATGTGGAGTTATGTTTGCAGCGATAAAGAAAGACAGTTGATTAAAGTTGAAAAGGAAGAGACTCCGACACCCAACGATGAAGACTCAGATAGAAATGTGGTTTTAGACGAAGTATCCAATCAAGATGGAATCAGAATTGAAAAGAGCGGAAACGTATTAGATGAAAACATCAGTGAATCTGAGAACGACAGACAGACATACACACATAAGGATGTGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACGGAAAACCGCACGAGTGCCAAGAGTGCGGCCAGAAATTCAAAGTAAAAAATAGCTTATTGAGGCATCGTCAAAACATGCACAAAACAAACAAGTATCAGTGCGAAAAATGCAATAAATCGTTCAGAAGCAAATATGCTTTGGTAAGTCATAATAAAGTGCATGAGAAAAATGAGTCTTACAATTGTAACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGAGATAAAAAAGTGCGATATTTGCAAAAAGACATTTAAATACAAACAGGGTTTAAGCAAGCACATGTTGGCTGTACATTTGGGCTTTCAGTTAACGCGCTTTGAATGCGACATTTGCAAAAAGACATATAAATACAAGCGAAGTCTACGTGACCACATGTTGGCTGTACATTTGGGCTTTCAGTTAACGCCCTTTGAATGCGACATTTGCAAAAAGACATATAAATACAAGCGAAGTCTACGCGACCACATGTTGGCTGTACATTTGGGCTTTGAGTTAACGCTCTTTGAATGCGACATTTGCAAAAAGACATATAAATACAAGCGAAGTCTACGCGACCACATGTTGGCCGTGCATTTTGACCCTGAATTAACGTCCTTTAAGTGCGACACTTGCAATAAGACATATAAATACAAGCGAAGTCTACACGAGCACATGTTCGCTGTGCATTTGGGCACTAATCCAACGCCCACTGAATGCGAAATTTGCAAAAAGACTTTTAAACACAAACAGAGTTTAAGCAAGCACTTGTCGGTTATACATTCGGACATTCCGCCCACTCAGTGCGACATTTGTAAAAAGACATTTAAACACAATTACAATTTAAGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATATAAAAATAAACAGGGTTTAAGCAAGCACATGTCGACTGCACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAATAAGACATTTAAAAATAAACACGGTTTAAGCAGGCACATGTCGACTGCACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAATTCCAAGCTTTATTTACGCAAGCACATGTCGGCTATACATTCGGACCTTCCTCCCGCTCGGTGCGACATTTGCAAAAAGACATTTAAATACAAACAGAATTTAAGAAGGCATATGTCGACTGTACATTTGGGCTTGAAGCCAACGACCGTTGCCAGTGAGTGCGACATGTGCAAGAAGACATTTAAATCCAAGCCTTATATACGCAAGCACATGTTGGCTGTACATTTGGGCTTGAAGAGAACACGCACTAAAAGAAAAGTTATTTAA
Protein Sequence: MAAILNQTQTPLCRCCHKNGIFKSLFSDYIYNENEVENYSQMLHATFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKMWSYVCSDKERQLIKVEKEETPTPNDEDSDRNVVLDEVSNQDGIRIEKSGNVLDENISESENDRQTYTHKDVRKFKCSICNNGFTLSRSLKAHMKTHKDGKPHECQECGQKFKVKNSLLRHRQNMHKTNKYQCEKCNKSFRSKYALVSHNKVHEKNESYNCNLRENRFKRRENFNRQMLTHAEIKKCDICKKTFKYKQGLSKHMLAVHLGFQLTRFECDICKKTYKYKRSLRDHMLAVHLGFQLTPFECDICKKTYKYKRSLRDHMLAVHLGFELTLFECDICKKTYKYKRSLRDHMLAVHFDPELTSFKCDTCNKTYKYKRSLHEHMFAVHLGTNPTPTECEICKKTFKHKQSLSKHLSVIHSDIPPTQCDICKKTFKHNYNLSKHMSAVHSDLPPTQCDICKKTYKNKQGLSKHMSTAHSDLPPTQCDICNKTFKNKHGLSRHMSTAHSDLPPTQCDICKKTFNSKLYLRKHMSAIHSDLPPARCDICKKTFKYKQNLRRHMSTVHLGLKPTTVASECDMCKKTFKSKPYIRKHMLAVHLGLKRTRTKRKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386919;
90% Identity: iTF_01386919;
80% Identity: iTF_01386919;