Sfor012252.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:212193-219785[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.9 5.6e+03 -2.3 1.9 19 25 13 19 9 20 0.92 2 16 0.23 1.6e+02 2.6 1.8 15 41 173 196 166 198 0.77 3 16 3.8 2.7e+03 -1.3 2.9 9 43 196 226 188 227 0.72 4 16 0.98 6.9e+02 0.6 4.0 13 29 227 243 216 253 0.78 5 16 0.0022 1.5 9.1 1.0 18 43 286 308 279 309 0.84 6 16 0.0018 1.3 9.4 0.2 15 39 314 335 310 340 0.77 7 16 0.0038 2.7 8.3 0.1 17 39 347 366 342 371 0.76 8 16 0.007 5 7.5 1.1 17 39 378 397 373 402 0.77 9 16 0.01 7.1 7.0 1.8 14 31 406 423 398 436 0.76 10 16 0.063 44 4.4 2.7 17 40 440 460 432 464 0.79 11 16 0.014 9.7 6.5 1.3 18 44 470 493 468 493 0.90 12 16 4.4e-05 0.031 14.5 0.7 18 44 499 522 497 522 0.95 13 16 1.5e-05 0.01 16.1 1.4 18 44 528 551 526 551 0.95 14 16 0.12 87 3.5 1.4 18 39 557 575 555 580 0.74 15 16 1.3e-05 0.0089 16.3 3.4 6 43 574 608 571 609 0.84 16 16 0.32 2.2e+02 2.2 0.1 18 29 619 630 614 648 0.83
Sequence Information
- Coding Sequence
- ATGGCTGCAATATTAAACCAAACACAAACACCGTTATGCAGATGTTGTCACAAGAATGGCATATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGCTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAATGATGTCCCAATTAAAATAGAGAAAATGTGGAGTTATGTTTGCAGCGATAAAGAAAGACAGTTGATTAAAGTTGAAAAGGAAGAGACTCCGACACCCAACGATGAAGACTCAGATAGAAATGTGGTTTTAGACGAAGTATCCAATCAAGATGGAATCAGAATTGAAAAGAGCGGAAACGTATTAGATGAAAACATCAGTGAATCTGAGAACGACAGACAGACATACACACATAAGGATGTGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACGGAAAACCGCACGAGTGCCAAGAGTGCGGCCAGAAATTCAAAGTAAAAAATAGCTTATTGAGGCATCGTCAAAACATGCACAAAACAAACAAGTATCAGTGCGAAAAATGCAATAAATCGTTCAGAAGCAAATATGCTTTGGTAAGTCATAATAAAGTGCATGAGAAAAATGAGTCTTACAATTGTAACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGAGATAAAAAAGTGCGATATTTGCAAAAAGACATTTAAATACAAACAGGGTTTAAGCAAGCACATGTTGGCTGTACATTTGGGCTTTCAGTTAACGCGCTTTGAATGCGACATTTGCAAAAAGACATATAAATACAAGCGAAGTCTACGTGACCACATGTTGGCTGTACATTTGGGCTTTCAGTTAACGCCCTTTGAATGCGACATTTGCAAAAAGACATATAAATACAAGCGAAGTCTACGCGACCACATGTTGGCTGTACATTTGGGCTTTGAGTTAACGCTCTTTGAATGCGACATTTGCAAAAAGACATATAAATACAAGCGAAGTCTACGCGACCACATGTTGGCCGTGCATTTTGACCCTGAATTAACGTCCTTTAAGTGCGACACTTGCAATAAGACATATAAATACAAGCGAAGTCTACACGAGCACATGTTCGCTGTGCATTTGGGCACTAATCCAACGCCCACTGAATGCGAAATTTGCAAAAAGACTTTTAAACACAAACAGAGTTTAAGCAAGCACTTGTCGGTTATACATTCGGACATTCCGCCCACTCAGTGCGACATTTGTAAAAAGACATTTAAACACAATTACAATTTAAGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATATAAAAATAAACAGGGTTTAAGCAAGCACATGTCGACTGCACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAATAAGACATTTAAAAATAAACACGGTTTAAGCAGGCACATGTCGACTGCACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAATTCCAAGCTTTATTTACGCAAGCACATGTCGGCTATACATTCGGACCTTCCTCCCGCTCGGTGCGACATTTGCAAAAAGACATTTAAATACAAACAGAATTTAAGAAGGCATATGTCGACTGTACATTTGGGCTTGAAGCCAACGACCGTTGCCAGTGAGTGCGACATGTGCAAGAAGACATTTAAATCCAAGCCTTATATACGCAAGCACATGTTGGCTGTACATTTGGGCTTGAAGAGAACACGCACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAAILNQTQTPLCRCCHKNGIFKSLFSDYIYNENEVENYSQMLHATFGILFEPSERDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKMWSYVCSDKERQLIKVEKEETPTPNDEDSDRNVVLDEVSNQDGIRIEKSGNVLDENISESENDRQTYTHKDVRKFKCSICNNGFTLSRSLKAHMKTHKDGKPHECQECGQKFKVKNSLLRHRQNMHKTNKYQCEKCNKSFRSKYALVSHNKVHEKNESYNCNLRENRFKRRENFNRQMLTHAEIKKCDICKKTFKYKQGLSKHMLAVHLGFQLTRFECDICKKTYKYKRSLRDHMLAVHLGFQLTPFECDICKKTYKYKRSLRDHMLAVHLGFELTLFECDICKKTYKYKRSLRDHMLAVHFDPELTSFKCDTCNKTYKYKRSLHEHMFAVHLGTNPTPTECEICKKTFKHKQSLSKHLSVIHSDIPPTQCDICKKTFKHNYNLSKHMSAVHSDLPPTQCDICKKTYKNKQGLSKHMSTAHSDLPPTQCDICNKTFKNKHGLSRHMSTAHSDLPPTQCDICKKTFNSKLYLRKHMSAIHSDLPPARCDICKKTFKYKQNLRRHMSTVHLGLKPTTVASECDMCKKTFKSKPYIRKHMLAVHLGLKRTRTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386934; iTF_01387289;
- 90% Identity
- iTF_01386934; iTF_01387289;
- 80% Identity
- iTF_01386934; iTF_01387289;