Sfor012247.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:160981-165656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.7e-06 9.4e-05 22.9 3.7 2 23 185 206 184 206 0.98 2 19 0.0014 0.081 13.6 1.3 1 23 209 231 209 231 0.97 3 19 1.4e-05 0.00081 19.9 1.4 1 23 237 259 237 259 0.99 4 19 0.0046 0.26 12.0 4.4 1 19 265 283 265 288 0.89 5 19 1.2e-06 6.5e-05 23.4 1.8 1 23 298 320 298 320 0.98 6 19 4.6 2.6e+02 2.6 0.4 12 23 341 353 340 353 0.89 7 19 4.2e-06 0.00024 21.6 1.1 2 23 364 386 363 386 0.95 8 19 2e-05 0.0011 19.5 1.8 2 23 397 419 396 419 0.93 9 19 3.8e-05 0.0021 18.6 0.5 2 23 428 450 427 450 0.93 10 19 3.2e-06 0.00018 22.0 1.0 2 23 461 483 460 483 0.94 11 19 0.00011 0.0061 17.2 0.6 2 23 494 516 493 516 0.93 12 19 0.0039 0.22 12.3 0.5 2 23 522 544 521 544 0.93 13 19 5.8e-06 0.00033 21.2 0.3 2 23 553 575 552 575 0.93 14 19 3.3e-06 0.00019 21.9 2.5 2 23 583 605 582 605 0.93 15 19 9.4e-05 0.0053 17.4 2.0 2 23 611 633 611 633 0.97 16 19 0.00057 0.032 14.9 0.5 3 23 643 664 641 664 0.93 17 19 0.00025 0.014 16.0 0.8 2 23 671 693 670 693 0.94 18 19 2.1e-05 0.0012 19.4 1.6 1 23 698 721 698 721 0.95 19 19 9e-06 0.00051 20.6 2.3 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGATAGAACTTAGCAAGAAGAATAATAATCATAGTTCCAACTTGCCGATTCAGGATTATTCTCCCTTGACAGATATGTCATCCTCAGCTGCCAATTCAGAAAAAGGTAGTAAAGATGATATGCCATCTGAGGATAGGGGGGCCGAGAATGCTGATCAAGGTCAAATTTCACCCGAAGAGGATGAAGGAACTGAGAGCGATGGATATCAAACCCCACAAGAAACAACATCGCAAAGACCTCAGAGGAGCAAGAAAAAGCCTATGTGGACAAATGACTACTACTTGTCAGACGATATGGAAGACAAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAGAAAATGTATAGTTATGCTTGCAGCGACAAAGAAGGACCGTTGATTAAAGTCGACATAAAAGTTGAAAAGGAAGAGACTCCCACTCCCAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGATGAAGTATCCAATCGAGATGGCAAAATTGAAGAGAGCGCAAACGAATTAGATGAATCTGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAAACATCGCTGTGAAGTATGCAGTAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATGTAATAATGGATTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGTTGGAACACCGCACGAGTGCCAAGAGTGCGGCCGGAAATTCAAAGTCAAAAATAGCTTATTGAGGCATTGTCAAAACATGCACACGGGTGTAAACAAGTACAGTTGCCAGTATCAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGCTTTGCTAAGTCATAAAAAAGTGCATGAGAAACATGAGCCTTACAATTGTGACCTGCGTGAAAATAAATTCAAAAGAAGAGAAAATTCCAAGCAAAATCTACGCAGTCATATGTCGGTTGTACATTTGGGCATTAAGCCAACGGCCACTACAATTGAGTGCCAAATTTGCAAAAAGACATATAAATCTAATAAAACTCTACGCAGGCACATGTCGGTTGTACATTTGGGCATTAAGCCAAAGCCCACTGCTGTTGAGTGCCACATTTGCAAAAAGACATTTAATTTCAAACAGAATTTAAGCAGGCACATATCGGCTGTACATTTGGGTTCTGAGTTAACACCCCTAGAATGTGACATTTGTAAAAAGACATTTAAATCCAAGGAGACTATACGCCAGCACATGTTGGCTGTACATTTGGGCTTGAAGCAAACACGCACTGCCACTGAGTGCAACATTTGCAAAAAGACATTTAAATCCAAGTCTAATATACGCCAGCACATGTTGGCTGTACATTTAGGCTTGAAGCAAACACGCACTGTCACTGAGTGCGACATTTGCATGAAGACATTTAAATACAAATATAATTTAAGCAGGCACATTTCAGCTGTACATTTGGGCTTTAAGCTTAAGTGCGACATTTGCAAACAGATATTTAAATCCAAACAGATTTTAAGCAGGCACATGTCGGCTGTACATTTGGGTTCTGAGTTAACACCCCTTGAATGTGACATTTGCAAAAAGGCATTTAAATCCAAGTCTAATATACGCCAGCACATGTTGGCTGTACATTTGGGCGTTAATACTGCAATTGAGTGCCACATTTGCAAAAAGACATTTAAATACAAACAGAATTTAAGCAGGCACATGTCTGCTGAACATTTGGGCCTTAAGGCTCAGTGCGAAATTTGCAAGAAGATATTTAAACACAAGAATAGTGTGCGCCAGCACATGTTGGTTGTACATGTTGGCTTTAATCCAACGGCCACTGATTGCGACATTTGCATGAAGACATTTAAATATAAACAGGGTTTAAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAGGATAATATACGCCAGCACATGTTGGCTATGCATTTGGGCTCTAAGTTTAAGTGCGACATATGCAAGAAGACATTTAAAACCAAGAATTATATACGCATGCACATGTTGGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATATGCAACAAGACATTTATATACAAACAGAGTTTAAGCAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCAAATACGTACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MIELSKKNNNHSSNLPIQDYSPLTDMSSSAANSEKGSKDDMPSEDRGAENADQGQISPEEDEGTESDGYQTPQETTSQRPQRSKKKPMWTNDYYLSDDMEDKEPLIENDVPIKIEKMYSYACSDKEGPLIKVDIKVEKEETPTPNDEDNHSDINVVLDEVSNRDGKIEESANELDESENDRHENKCNICNKTFRFKKYLESHMKTHFKHRCEVCSRDYQSKGELRKHEMVHKDERKFKCSICNNGFTLSRSLKAHMKTHKVGTPHECQECGRKFKVKNSLLRHCQNMHTGVNKYSCQYQCEKCNKSFRSKDALLSHKKVHEKHEPYNCDLRENKFKRRENSKQNLRSHMSVVHLGIKPTATTIECQICKKTYKSNKTLRRHMSVVHLGIKPKPTAVECHICKKTFNFKQNLSRHISAVHLGSELTPLECDICKKTFKSKETIRQHMLAVHLGLKQTRTATECNICKKTFKSKSNIRQHMLAVHLGLKQTRTVTECDICMKTFKYKYNLSRHISAVHLGFKLKCDICKQIFKSKQILSRHMSAVHLGSELTPLECDICKKAFKSKSNIRQHMLAVHLGVNTAIECHICKKTFKYKQNLSRHMSAEHLGLKAQCEICKKIFKHKNSVRQHMLVVHVGFNPTATDCDICMKTFKYKQGLNRHMSAVHSDLPPTQCDICMKTFKSKDNIRQHMLAMHLGSKFKCDICKKTFKTKNYIRMHMLAVHLGFKFKCDICNKTFIYKQSLSRHKSTVHLGLKQIRTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386903;
- 90% Identity
- iTF_01386903;
- 80% Identity
- iTF_01386903;