Sand004353.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000232.1:78348-84150[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.4e-05 0.034 14.5 3.2 13 41 161 186 156 188 0.82 2 11 0.14 67 4.0 2.1 17 29 215 227 201 240 0.80 3 11 0.1 47 4.5 0.6 18 29 244 255 238 265 0.86 4 11 0.21 96 3.5 0.5 18 29 271 282 268 294 0.82 5 11 0.11 50 4.4 0.6 18 29 299 310 293 317 0.86 6 11 0.046 21 5.6 2.3 17 38 328 346 319 352 0.78 7 11 0.1 48 4.5 2.3 17 43 356 379 350 383 0.82 8 11 0.00085 0.39 11.1 1.7 17 43 387 410 374 411 0.86 9 11 0.033 15 6.1 0.3 18 43 416 438 413 439 0.82 10 11 0.00085 0.39 11.1 1.0 18 43 444 466 440 470 0.91 11 11 2.2e-05 0.01 16.2 3.8 15 43 472 497 466 498 0.90
Sequence Information
- Coding Sequence
- ATGTTGTACGATACATTCGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTACACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGCGATCCAATTGACGGGGGCACTGCAGTGACCCCAGATGTGAAACAAAAGACTTCTGAAGATGAAGACAGTGACACAGATATAATAAATAAGGTTTTAGAGGAAGAGTCAAATGAAGAGGTGAAAATGGAAGAGATCGGAAACAAGTCGGATGCAACTTTCAGCGAATCTGAAGAATTTACAGTCACCATCGAAGTTAAGACAGAAGAGAGTGTCGATTATGAAGACTCTTGTATAGACAAAGTGTCAGACGAAGATGTCACAATTGAAGAGAGCAGAAAGGAATCGTTGAGTGAATCGGGTGTCAATTTAAGAAACACAAGCGACAAACATGAGAATAAATGCAATATTTGCAATAAAACTTTTAAACGCAAAGGGAACCTAGAAAATCATCTCAGAACTCACGAGCGCTACAAGACATTTAAATCCAAGGCGTATATACGCCAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTATGCCAGCACAAGACGGCTGTACATTCGGGCTTAACATTTGAGTGCGACATTTGCAAAAAGACTTTTAAATCCAAGGGGTATATTCGCCAGCACATGGCTGTACATTTGGGCTTAACATTTGAGTGCGACATTTGCAAAAAGACTTTTAAATCGAATGTGATTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTAACATTTGAGTGCGACATTTGCAAAAAGACTTTTAAATCCAAGGGGTATATTCGCCAGCACATGGCTGTACATTTGGGCTTTAATCCAACGCCCACTGAGTGTGAAATCTGCAAGAAGACATTTAATCACAAACAGGGTTTACGCCACCACACGTCGGCTGTACATATGGACTTTACATTTGAATGCGACATTTGTAAGAAGACATTTAAACACAAGGATCGTATACGCAGGCACATGTCGGTTGTACATTTGCGCACTAAGCCAACGCCCACTGAGTGCGGTATTTGTAAAAAGTCTTTTAATTACACAGGTGGTTTACGCCGCCACATGTTAGCTGTACATTTGGGCTTTACTACTGAGTGCGACTTATGTAAGAAGACATTTAAAAACAAGGATGGTATACGCAAGCACATGTCGGCTGTACATTTGGGCTTTACATTTGAGTGCGACATTTGCAAGAAGAAATTTAAATCCAAGGCGAATTTACGCCAGCACATGTCGGCTGTACATTTGCGCACTAAGCCAACGCCCATTGAGTGCGGCATTTGTAAAAAGTCATTTAATTACACAGGTTGTTTACGCCGCCACATGTCGACTGTACATTTGGGCTGA
- Protein Sequence
- MLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRDPIDGGTAVTPDVKQKTSEDEDSDTDIINKVLEEESNEEVKMEEIGNKSDATFSESEEFTVTIEVKTEESVDYEDSCIDKVSDEDVTIEESRKESLSESGVNLRNTSDKHENKCNICNKTFKRKGNLENHLRTHERYKTFKSKAYIRQHMSAVHLGFKPTPTECDICKKTFKSKVTLCQHKTAVHSGLTFECDICKKTFKSKGYIRQHMAVHLGLTFECDICKKTFKSNVILRQHKTAVHSGLTFECDICKKTFKSKGYIRQHMAVHLGFNPTPTECEICKKTFNHKQGLRHHTSAVHMDFTFECDICKKTFKHKDRIRRHMSVVHLRTKPTPTECGICKKSFNYTGGLRRHMLAVHLGFTTECDLCKKTFKNKDGIRKHMSAVHLGFTFECDICKKKFKSKANLRQHMSAVHLRTKPTPIECGICKKSFNYTGCLRRHMSTVHLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386040;
- 90% Identity
- iTF_01386040;
- 80% Identity
- iTF_01386040;