Sand011260.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- egg_1
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000674.1:123630-164307[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 5.1e+03 -2.5 0.1 28 38 1457 1467 1434 1468 0.79 2 2 9.6e-15 3.2e-11 43.0 0.0 4 75 1499 1563 1496 1565 0.88
Sequence Information
- Coding Sequence
- ATGGAACATTCAAAGCCTGATTCAAATAAAGAAGATGATGCTTCTCAAATAGTTATTGTAGACCTTAAAAATGCCGATGATAACAATGTTACGAAGGAGGAAAGCATTGATTTTAACAATACTGGATTTGAGGGAAGTAAATCGAAAAACCATGCTGACAATAAAACAGTCAGTAATGTCGAAAATGATAATTTACCTGTTTCTAATCCAGAAAATACAACCAAAAAAGAAGATTGTGGTGATGTAGATACTTCAATAATAAATTTAGATAGTTTAATTAAAGATTTAGATAAACCTAATACTAAGGTTTCAAGTGACATAGATAACAATGCAAGTCTTGAAATTATATGTGTGGATAGTGATAGTGAGAGTGAAAACATACAGTCAGACGAAAGTGTCTCAAATGTACAAGAATCTCTTTCCAAAAAAGAATCGTGTATTTCTGGTGTTAAATTAAAAGAAGAAACAGCAGAATTGAAGCCTACTGTCACAAATGATGAGTCTTCTAACAGTTCTATTTCAGAAACAGCTCCAGCAAATACAGAAAATAAAAATGCAGACTTGAGAGAAATTGAAAAGAAAAATATTGAGACTGTATTATCAATGCCAATAAACAAAGGCCATGGCCTAACTAAGCCAGATTTGATGATCCATATACCCATGGGATCTTTTGATTTGTCCCTGGAAAGTGGTATTTCTAGTTACGACATTGATTCTCCTGTGAAAGAAGTAAAAGCTTTTACTGGTGACGATGAAGTCAATAAAATAGATGATGTTACAGATTGTTCTATAATTGAAAACAATTCACAAAATGTTGAGTCTGATAATGAGCAAACAATGGATACTGATCGACCTGACTTAGAATGTGTTCAGACTGACAAATCAGATACTAATGTCTTGACTAACAATGAAAGCATTATAGATGTAGATAAAGGTAAGATCACAGAGGAAAAAGATAATGAACTAAGTGAAAAATCAGACTCAAATACCTTCAACAACAAACAAAATGTGGAAATCAATTTAGCAGAATTTGAAGATGATAAAAGTAATCCAAAAATGGATGAGAATAAACTAGAAAATGATGAAAAAAATTCAAGGGGAGATTCTTCATGTAAAGAAACACATGAAAAAGCTTTTGTTCAACGAGTAAATGTAATTAATATTGAAAGACTCATGTCACAAAAAGATGTCTCTAATGGCACAAGTGAAGCTAACATCCAAAATATAAATATAAATGTGGATACATTAAATGATAATAACATATTGAATGAAGATGCTGTCATAGACAATAATGTCTGCCATGATAGTGTAATGGACAATGAAGAAAAATGTTCAAATCTGACAGAGCCATCTAATGATAGTATGAACAAGGTTGAATTTGACACAGATATTTCAGATGTGAATATGGAAAATCTAATAAAAGATCAAAACCAACCATCGACCTCCTATTCAATGGAACAAGATGAAGAAATGGAAGTGGAAGACAGTTTGGGCCTTTTAGCGGAATCTTCAAGAGTAATGGAAGATGATGAGGATCAGGATCAAGAAGATGATGAAGACGGTTCACCAGATGATGATGATGGCGATTTTGATCCAGATGAAGAGAGAAATATAGCAACTGTTGACCACTCGGAAGATTCGAGCACTCATCATGAGTCAGAAGTCACAAAAGACCAGCAAAGTTTTATGGGAATGGCGGAAGGAACCAAAGTTGACGAAATCGATATAGTAATCAATGAAGTTCATACGGGCAAGGAGGCCACGGATGTCGAATTTAATGAATTGGCTGCTGAGTCACAAGATATTACCTCAAACGATGTTGATGCTGATACAGACATCACTATAGAAGAGGCTCCAATTAAAACAAGTTCAGTGGAGCAGAATGAGAACACAACTTCAACTGACAATACGCCGGACATAGAGACCACAAAGTTATCAGACGAATCTAATGATCAGAGGGAATCAAAGTCTGACGATCAACCCGCAGGTTTTCAAGAGAAAGAGGGGCGAACTACACCCACTGCGACCTCAAACGCTGAAACTGAGAAGCCCTCACCGAGCAATGCCAAGAAATTGTGTATAGCGAAGAATCAGCTGGTAGTCAATTTTGTGGATCTCGAAGAGACCTCTTCAGAGGATGACGAATCCAATACAACTGTCGCCGTCGAGCTTTCGTCGCCGAAGCTAACACAGTCCAACGACAACGTGACGAGTCTCCACATACCGATGGAGATCGAAATAATGTCCACTTCCGGTGGCGCTACATCGGAAATAGTCACAAGACAGGGGGAAGTCGTCATAAGCGGTGTGCCAAAGCCACGGACACTTGCCAAGACTGCAAGACTGAATACAAGTGAAGTGACAATCAAAACAGCGAACACAAATCCTCCCATCGTCATACCGGAAACGAAGATACGAGATAAAAAGTTAACAGATAAACCAATGGAGCAGAGGATGTCTTTGGAAGTATTCAATGTGGATTCCGACGAAGAAGAGAAAAAAATGGAGGTGACCGAGGAAAAAACGAAGAAAGCAAAAGAAACGTGGAAGTGCATAAACTCTGAATGCCAAAAGAGCTCGACCGAATACATGGATGCCGACTCCACGACAGTTTTATTCTTCGATGCAAGTAGAAAGAAACGGCGAATGGTGTGTTTTGAATGTGCCGACATGGTGCACGTTAAGAAACAGCTCGCCGAACACTACAAAACTTACGCAAACCTGGCGACGCCCCGCCCGCGCCCTCGCCGCCCGACTACGCACGCACACAACTACAAATTCCTTGTACGTACACACTACACTCTCAAGAATGCCGCGACGATTGATGGGGAGCGCAGTGTGCTACGGCGACGGCACGATAGACCGTTGCCGTTCACGGCTCTTGTGAAAGATTTCCAAGAAATGAAGCCCTTACTGGATTTGGACCCTGGGAAGTTGTCTCAAGAGTTGGTTGAAATATCCGACTCGGACTCAGACGAAGAAGGCGGTGATGATTTGTCTGTTGAGATGGTGGGACTTGAATCTGGAAAGTTCCTCGAAGATAACTTGATGGACGTGTTAAATGAAACTTGGACCAAATATGACATGGACAAAAGATTGAAGGAGTCCCACGATGCTCTGCTGGCTGACATAGAGCGTGTCGAacAGGAATGCAAAAATATCGACGCCATGTTTCACAAGTGTCAAGTCAACACTGACAAGATGAGGAATGAATTTTACGCTACATTCGAGCCGAAGATAAAGCAGTTGCAGTCCATCGTCATTTTTGATACACCATTGACAAAGGAACAGAGAGTATATAATACACTAAACAACGAAATCGCCTCCAAGAAGACGAATTCTTCCACCGAGAATACATCTTCAAGCGATGCACCAATTCAGGACCAAAAGAAACAGAAAGAGAACAAAGAAGAGGATGATAACATGGAGGTGTCTGTTGTGGAACTGTCTAAGGAGGCGGCGCCGGCGGACTTGCCTGCGCCGGGCGAGTTGTACCGTGCGCCCCTGAAGGCGGGCGATGCGGTGTACGCGAGACGCACCGCGTTCGGCTCCTGGATGCCGGCGCACATTATCGAAATTCAGACCACCACAGATAATGAATTCACGTCGTGTCGCGTGAGGTTCGATGGCGCCAAAAACGCAACGAAGACTCTTCTCGCGAGATATATAGCTTACAACGTCCCTGCCGCTGTACGAATGACAATTGGTACTCGTTTGATAGCGCTGTTCAAAGATCCAAATTCGGCCGTCACGGGCAAAGTGTACTACTCAGGTGTTGTTGCTGAAATGCCGAACCCGGTGAATAATTACAGATACCTGGTCTTCTTCGACGACGGCTACGCCCAGTACGTGTCCCATAGGGACACTCGACTTGTGTGCGAATGTTCGCTGCACGTGTGGGATGAAGTCCATCCCTACTCGAGACAGTTTGTCCGCGACTACCTGCTGGCTTATCCCGAGAGGCCGATGGTGCGACTGCACAAAGGCCAAAATATCAAGACCGAATGGAATGGTAAATGGTGGATTTCCCGAGTACTGAGCGTGGACGCTTCTCTGGTGCAAGTTTACTTCGAAGTAGACGACAGGACTGAATGGATTTACAGAGGATCGACTCGCTTGGCGCCTCTCTTCTTGGAGTTGCAAGCCGCCGAGAGACATAGGAACAGACCTAACATGCCCAGGTCCAACAAAGCTCAACCCAGGTCGAACATGCCATACGTCGAGTACACGAGGCCCGACGAGCAGAAACAGAATGATGCGCAAACGCCGCAACAAAATACTGAGGAGATTCGTAGACAGCAGCGAGCAGTGGCTAAAAAATCTACTGGCGGTCTTCCGCCGCCGCCAGCTCCCATCGGTGTTCAGGAGGCGGTCACCAGCCGGGTTGTGTACTACTCGCCGAAGAACGCAGTGAAACCTCACGACATGGTTCCTCACAACTGCGGCCCGTCGTGCAAGCGAACAGATGTTCTAACACTGAAAGAGCTGCGTACATACAATCCGTTGACGAAGCCGTTGCTTAGCGGATGGGAGAGACAAATAGTGAAGTACAAGAACAACCGCGAAGTGATGTACCGGGCGCCGTGCGGGAGACGAATCCGCAACATGCCTGAACTGCATCGGTACTTGCGCGCGACATGCTCAGACATGCCCGTGGACCTGTTCGACTTCGAACCGTCCACTCATTGCCTGGCCGAGTTCGTGTTAAACCGATGTCGCGTCAGCAAGAAGGATTTGTCCCACGGCAAAGAGAACGTGCCGGTCCCGTGCGTAAACTACTACTCGGACACGCTTCCGGACTTTTGCAGTTACAATACAGAGAGAACTCCCACTGCTGGGGTGCCTCTCAATTTGGACCCCGAGTTTCTTTGCGGCTGTGACTGTACCGATGATTGTCAGGATAAAACGAAGTGTGCCTGTTGGAAGATGACCCTAGAAGGTGCTAGAACAATCAACCTGACTGGACCAAATGTGGGCTACGTTTACAAGAGATTGCCTGAACCGTTGCCGACCGGGATATACGAATGTAACTCTAGGTGCAAATGTAAACACACTTGTTTGAATCGAGTAGCACAGTTTCCGTTGCAATTGAAATTACAAGTATTTAAAACGTCGAATCGCGGTTGGGGAATTAGGGCACTCAACGATGTGCCCAAGGGGGCGTTCCTGTGCGTGTACGCAGGAAATCTGCTCACAGACGCCACTGCCAATCTGGACGGTTTGAATGAAGGCGATGAATATCTAGCCGAACTGGATTACATAGAAGTCGTGGAACAAATGAAGGAAGGCTACGAAGAGGACATACCTGATGCTGACAAAGAAAAGGATAAGAAAGATGGCGAGAAAGAGGAGTCCGATGAGGAAGAGTCTTCCAGTTCTGAAGAGGAGGCGACTTCCGCCACAGCGGACAAGGATGACGATGACTTCCGTCCCGCTTACGACGTGGAATATAGCGCCGTCTTTAAGAAAACTCTACGTAAACGCGAGAAGAGATTAAAAAATAGGAAAGATGAAAACGATAAGGACAAAAAAGAAGAGAAAGATAAAGATAAAGTTAAAGGTGGGAAAGAAGACGCAGATTGCATCACAATCAGTGACGACGAAGAAGCAATAAGGGAACCGTCTCGCTTCGCCGCTGAGTCCAGTATGAACGGTAATGACTTCGTGTCCAAatttagATCGCTTCGCTCGTATtttggcaaagacgaggcgtgctacataatggacgccaaggttcaaggcaacataggcagatatctcaatcactcgtgctgcccgaacgtgttcgttcagaacgtgtttgtcgacacacacgacccacgttttccttgggtggcgtttttcgcgttatcctacataaaggcgggcacagaactcacttggaactacaattacgacgtgggttcggttcccgggaaggttctctactgtctgtgtcgcgcgcccaattgcagggggcgtcttttgtaa
- Protein Sequence
- MEHSKPDSNKEDDASQIVIVDLKNADDNNVTKEESIDFNNTGFEGSKSKNHADNKTVSNVENDNLPVSNPENTTKKEDCGDVDTSIINLDSLIKDLDKPNTKVSSDIDNNASLEIICVDSDSESENIQSDESVSNVQESLSKKESCISGVKLKEETAELKPTVTNDESSNSSISETAPANTENKNADLREIEKKNIETVLSMPINKGHGLTKPDLMIHIPMGSFDLSLESGISSYDIDSPVKEVKAFTGDDEVNKIDDVTDCSIIENNSQNVESDNEQTMDTDRPDLECVQTDKSDTNVLTNNESIIDVDKGKITEEKDNELSEKSDSNTFNNKQNVEINLAEFEDDKSNPKMDENKLENDEKNSRGDSSCKETHEKAFVQRVNVINIERLMSQKDVSNGTSEANIQNININVDTLNDNNILNEDAVIDNNVCHDSVMDNEEKCSNLTEPSNDSMNKVEFDTDISDVNMENLIKDQNQPSTSYSMEQDEEMEVEDSLGLLAESSRVMEDDEDQDQEDDEDGSPDDDDGDFDPDEERNIATVDHSEDSSTHHESEVTKDQQSFMGMAEGTKVDEIDIVINEVHTGKEATDVEFNELAAESQDITSNDVDADTDITIEEAPIKTSSVEQNENTTSTDNTPDIETTKLSDESNDQRESKSDDQPAGFQEKEGRTTPTATSNAETEKPSPSNAKKLCIAKNQLVVNFVDLEETSSEDDESNTTVAVELSSPKLTQSNDNVTSLHIPMEIEIMSTSGGATSEIVTRQGEVVISGVPKPRTLAKTARLNTSEVTIKTANTNPPIVIPETKIRDKKLTDKPMEQRMSLEVFNVDSDEEEKKMEVTEEKTKKAKETWKCINSECQKSSTEYMDADSTTVLFFDASRKKRRMVCFECADMVHVKKQLAEHYKTYANLATPRPRPRRPTTHAHNYKFLVRTHYTLKNAATIDGERSVLRRRHDRPLPFTALVKDFQEMKPLLDLDPGKLSQELVEISDSDSDEEGGDDLSVEMVGLESGKFLEDNLMDVLNETWTKYDMDKRLKESHDALLADIERVEQECKNIDAMFHKCQVNTDKMRNEFYATFEPKIKQLQSIVIFDTPLTKEQRVYNTLNNEIASKKTNSSTENTSSSDAPIQDQKKQKENKEEDDNMEVSVVELSKEAAPADLPAPGELYRAPLKAGDAVYARRTAFGSWMPAHIIEIQTTTDNEFTSCRVRFDGAKNATKTLLARYIAYNVPAAVRMTIGTRLIALFKDPNSAVTGKVYYSGVVAEMPNPVNNYRYLVFFDDGYAQYVSHRDTRLVCECSLHVWDEVHPYSRQFVRDYLLAYPERPMVRLHKGQNIKTEWNGKWWISRVLSVDASLVQVYFEVDDRTEWIYRGSTRLAPLFLELQAAERHRNRPNMPRSNKAQPRSNMPYVEYTRPDEQKQNDAQTPQQNTEEIRRQQRAVAKKSTGGLPPPPAPIGVQEAVTSRVVYYSPKNAVKPHDMVPHNCGPSCKRTDVLTLKELRTYNPLTKPLLSGWERQIVKYKNNREVMYRAPCGRRIRNMPELHRYLRATCSDMPVDLFDFEPSTHCLAEFVLNRCRVSKKDLSHGKENVPVPCVNYYSDTLPDFCSYNTERTPTAGVPLNLDPEFLCGCDCTDDCQDKTKCACWKMTLEGARTINLTGPNVGYVYKRLPEPLPTGIYECNSRCKCKHTCLNRVAQFPLQLKLQVFKTSNRGWGIRALNDVPKGAFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPDADKEKDKKDGEKEESDEEESSSSEEEATSATADKDDDDFRPAYDVEYSAVFKKTLRKREKRLKNRKDENDKDKKEEKDKDKVKGGKEDADCITISDDEEAIREPSRFAAESSMNGNDFVSKFRSLRSYFGKDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALSYIKAGTELTWNYNYDVGSVPGKVLYCLCRAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387620;
- 90% Identity
- -
- 80% Identity
- -