Sand013400.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- bab1
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000855.1:27348-30497[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-17 1.2e-14 54.1 0.0 1 43 28 71 28 73 0.95 2 2 7.6 1.9e+03 -1.0 0.8 6 15 165 174 161 176 0.85
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAACACGAATCAGAGTTTGGTGCACAACTTGCGTTTCCGAGAGCGAGGCCCGCTGAAATCTTGGCGCCCAGAAACAATGGCTGAAGCTATTTTCTCCGTACTCAAGGAAGGCCTATCACTTTCGCAAGCCGCGAGAAAATACGACATACCCTATCCAACGTTTGTACTGTATGCGAACAGAGTGCACAATATGCTGGGACCCAGCGCCGATGGAGGGGCAGATCTGAGACCAAAGGGACGCGGAAGACCGCAGCGCATTCTGCTGGGCGTGTGGCCCGACGAACATATCCGCGGAGTTATACGAGCCGTAGTGTTCAGAGACACCCATGCCCACACTGCCCTTCACCAGCGCACCGAGGACATGCCCGTCTACCCCGCCATCACGGATGGTATGCCGGTGCCCGTTCCAAATCAGTACGGGCCCGTGGCTTGCGGTAACGGAAGAGAGGGCGGCGTGTCGCCGAATGCGGCTACCGCGGCCGCCGTCGCAGCCGTAGCACACGGCCTCCGGCGACAGATGTGCAACATGGTCGTGGCTTCCCAAAGATCTGTAGACCATTCTCCGCATCTGGGCTTGCCACCGTTACCGCTTCAATCGCCGAGGCTACCGTCTCCGCTCTCGACTGGACTGGAGTCACCGCTCTGCTCGCCACCGCCGCCGGGACACGCTCTGGAACCGCCGAAACCTGCCGATCCATTTAGACCGTTCGCTTCTCCTCGACCCGACAGTCGTTACTCTGACTCCGTGACGGAGATAACAGAGATGGGCCCTCCGAAAACGCCGATGAGCGGCGCCAGGAACGGCAAGGACCCGTCGCCGCTTCCCTTGAAGATTGAGCTCCCGCCCGGCGAGGCTCGGGCGGAGAACATGTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHTALHQRTEDMPVYPAITDGMPVPVPNQYGPVACGNGREGGVSPNAATAAAVAAVAHGLRRQMCNMVVASQRSVDHSPHLGLPPLPLQSPRLPSPLSTGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYSDSVTEITEMGPPKTPMSGARNGKDPSPLPLKIELPPGEARAENM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01341062;
- 80% Identity
- -