Basic Information

Gene Symbol
nfxl1
Assembly
GCA_947579665.1
Location
OX388345.1:5767837-5800976[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.8 1.1e+05 -4.0 1.5 15 19 264 268 263 268 0.81
2 20 0.19 1.1e+04 -0.8 0.8 4 10 300 306 299 306 0.95
3 20 2e-07 0.012 18.3 19.2 1 19 314 331 314 331 0.99
4 20 2 1.2e+05 -4.6 1.1 6 18 357 361 357 363 0.49
5 20 1.3e-06 0.08 15.6 7.4 4 19 406 421 405 421 0.96
6 20 2 1.2e+05 -4.2 1.0 6 10 446 450 445 451 0.85
7 20 0.00018 11 8.8 8.7 1 19 456 476 456 476 0.89
8 20 2e-06 0.12 15.0 8.7 1 18 520 537 520 538 0.97
9 20 0.00096 59 6.5 17.7 3 18 574 589 572 590 0.92
10 20 4.6e-09 0.00028 23.5 16.7 1 19 599 617 599 617 0.99
11 20 2 1.2e+05 -4.5 1.5 5 10 652 657 652 657 0.83
12 20 0.00014 8.6 9.2 7.5 9 19 671 681 669 681 0.91
13 20 0.004 2.5e+02 4.5 7.0 1 12 690 700 690 700 0.95
14 20 0.86 5.2e+04 -2.9 5.7 14 19 732 737 732 737 0.89
15 20 0.59 3.6e+04 -2.4 0.3 8 12 753 757 753 757 0.78
16 20 0.25 1.5e+04 -1.2 6.4 1 11 773 783 767 786 0.90
17 20 2 1.2e+05 -5.0 2.3 15 18 803 806 802 810 0.52
18 20 0.0018 1.1e+02 5.6 15.6 1 19 818 836 818 836 0.80
19 20 0.77 4.7e+04 -2.8 1.3 8 13 841 846 840 847 0.79
20 20 3.2e-07 0.02 17.6 10.1 1 16 891 905 891 906 0.97

Sequence Information

Coding Sequence
ATGACGTGTTACCTCCAGAAAAAAGCCGACCTTGAACCTCGGTGTCACGGGTTCGATTCCAGAAGGCCCCAAAGTTGCGATTTTCTCCATAAGAATACATGGTGGGGATTTTCGAAAATTTTTTCGTTGCACTTCCCAGAAAAGCAGAGAGTTGAAATTCAAGGGATCGCTAGAAGCCGTGCATATCCAACGAAAATAGAAAAGATATCTTCGAATATTGTCCATGGTTCAATTCTAGAAGGGTACTATGATGCTGAGCAAAAGAGAGAAATCCATCCAGCATCCCTTGGCTCTGCAATTGATAGTGTGTGGACAGACATGGCTGGCAGAGGACGGGGAAATGCATGGAATCGAGGACCTGTTACGTTTGGTTCAACATCCTCTGAGACGAAACCGAAACCCGGCATCAAAAATATGAAAGCTGCCAATGTTAAAAAGGCCCCAATTGCTAAGAAAACTTACTCATCGTCAGAAGAAGAGGATGATGATGATAATAATAGCGATGATATCTTAGGGAAAGTTCTGCAGAAGTATGCCCAACTCGGTGGAGCCTCGCATGATCTTGGAAGGACTCAGCTATTTCTCGAAGAAGTTTTTCATTCAGGCTCGGCTACTTGCTTAATTTGTATCTCAACCGTAGGAAAAAATGAAGCGGTATGGAACTGTAGCCTCTGTTATTGCTTTTTCCATCTTAACTGTTTGCAAAGATGGGCACAAGAAAGTATTCTGCATCAGAAGAGGGCTTTGGAAGAACAGCCTCTTAGTACTGCAGCTGATTTTAGTTGGAGCTGCCCTAAGTGTCGTCATTCATATTCAGAATCCGAGATTCCAAAGAAATACGTATGTTTTTGTGGCAAGAAGGAGGATCCTCCACCCTATGGGGGGTGGCATGTTCCTCATTCTTGCGGAGAAACCTGCGGTCGTGAACTTACTCCCAGTTGCGGGCATTCATGTCCTCTTCTTTGCCATCCAGGCCCATGTCCTCCTTGCCCTCATCAAGTAAATGTTAGTTGCCAATGTGGAAGGCAACCACCAAAGGCTGTACGCTGCTCTGGAAAAATTTGGTCTTGTGGACAACCTTGCAAAAAGGTTCTTCCTTGCAATAGTAGTTACTTGAGGATTAAAGACAATGCTCCAGTCGGAAGGGGACGAGGGAAGTTTCTGCAGCATTTAAATGAAACTAAGGAAGCAAAAGTTGGGAACGATGAAGAACCCCACGTGTGTTTAGAAATATGCCATTCTGGACCTTGCATGGCATGCCCTAGAAAGAGTTTGCAGCCTTGCCGTTGCGGTAAAGAATCAGCCATGAGGTTATGTTCAGAAATGGATTGGCAATGCAGACAGGTTTGCAGTAAACAGTTGGGATGTTGGAATCATAAATGCAGCCTTGTTTGTCATAGTGCTAAGGATGCGTGTGGACCATGCCCAAGAAGTTTAGATAGATTATGTGCCTGCGGCAAAACCTCTTTCCCTGGTTTACCTTGCGTCAGAGGCATTGCTGCGGAAGAAGAGCAATTGGAGCCTACCTGTGGAGACACTTGTGGGAAATTGTTAGCTTGCGGTGTTCATTCGTGTGCACGTAGATGCCATAAGGATGATTGCGGAGCTTGCCTGCAGATGAGAGTCCAAACCTGCCGTTGTGGGCAGTACTCGAAAGAACTTCCATGCCAGAAAGAATTCCTCTGTGAAAATAAGTGCAGAAGGACTAGGAATTGCTTGCGTCATCCATGCAGTCGCAAATGTTGCGATGGCCACTGCCCACCGTGTGACAAAATCTGCTCAAAGATGTTATCTTGCGGGAAGCATCGCTGTCCTGCCCCGTGCCATCGCGGCCCTTGCTATCCTTGCCCTTTGATGGTTTCTATATCATGTCCTTGTAAATCTACTTCCATAAAAGTGCCTTGTGGCCAGGAACGGCGAATCAAGGGTGATGCTAAAAGGGGTGTAATTGTGAAGTGTAGGAAGCCATGCAAACTTGCATCCCAGTGTCAGCATCCCCCTCGGCCTCACACATGCCATTCTGGTGAATGCCCATCCTGTCGGGAGGTCTGTGGGAGAGAGAGTGCGTGTGGCCATGCGTGTTCTGCAAAGTGTCATACGTCTGTGTGGGTCAAAGAGGAAATTGAGGCTCCGAAGAAACCTGCTGGTCCTTGGGAGAGGCCGCAAGATCCCAAAATAGTAAAGAAGTGCCTGCCTTGTCCCCCTTGCACAACAAGTGTTGAAGTTACTTGCTTAGGTGGACATGAAAGAAGCTTTCAGCCGTGTCACTCAGCCTCTCCGTATTGCTGTGGCCGTGAATGTGGTCGTTCACTTCCCTGCACCTCTCACTTCTGCTCATTTCCTTGTCATCATGTCAAAGGAGGGTCCAAAGATTTGGAGCATGAACCTGCTCTAGCTGGGAGGAACTGCGAAACATGCAATAATTCATGTTTGAAGCCACGGCCAAATGGTTGTTCACATGCTTGCCCATTGGGAAAGTGTCATCCTGGAGATTGTCCTCCTTGTAAACAAAATATGAAGCAAAAATGTCATTGTGGTCTAACACCGACCATTTTTATTGAATGTCGTAAATGGGTTGGGGCATTAACGGAAGACAGTGAGGCTAAAAAAGATATGATTAGCGTGGAGAAGCTGCTTTCCTGTGGAAGTCAATGCCCAAAGCTGCTATCCTGTGGTCACCGCTGTGAAATCACATGCCATTCTGGGCCTTGCCCTGCCGATGTACACGATGGGAGACTCGAAGGTGAAGAGGTTCAATGCACTCAGAAAGTTAGGGTCGTCTGTCCCTGTGGGCTTCTCAAGCAAAGGCGCATCTGTAAAGATGTTCTTGCAGCTGCTAAAGAAAGAAAGGATCCCAAGTCTCTGGTTTTACTCGAATGTAACGAAGATTGTAAGCTACGTAAACAAGAACAAACCAGGGCAAGAGAAGAATCTGCAGAGAGAAAGAGGAAAGAAGAGGAGAGGAGGAATGCAGAGGAATTGGAGAAATTCAAATTGAAACAAGAAGGGAGAAGGGGCAGGGTTCGTAGGAGGAGAGACAGGGAGGACCTGGAACATGATGCCAATTTCTTTGCTCAACACTGGATCATAATTTCGATTGTACTGACAATTGCAGCAGTTGGAATTGCTATATTTTTGTTGGTGGAGACAAATTCAAAGTGA
Protein Sequence
MTCYLQKKADLEPRCHGFDSRRPQSCDFLHKNTWWGFSKIFSLHFPEKQRVEIQGIARSRAYPTKIEKISSNIVHGSILEGYYDAEQKREIHPASLGSAIDSVWTDMAGRGRGNAWNRGPVTFGSTSSETKPKPGIKNMKAANVKKAPIAKKTYSSSEEEDDDDNNSDDILGKVLQKYAQLGGASHDLGRTQLFLEEVFHSGSATCLICISTVGKNEAVWNCSLCYCFFHLNCLQRWAQESILHQKRALEEQPLSTAADFSWSCPKCRHSYSESEIPKKYVCFCGKKEDPPPYGGWHVPHSCGETCGRELTPSCGHSCPLLCHPGPCPPCPHQVNVSCQCGRQPPKAVRCSGKIWSCGQPCKKVLPCNSSYLRIKDNAPVGRGRGKFLQHLNETKEAKVGNDEEPHVCLEICHSGPCMACPRKSLQPCRCGKESAMRLCSEMDWQCRQVCSKQLGCWNHKCSLVCHSAKDACGPCPRSLDRLCACGKTSFPGLPCVRGIAAEEEQLEPTCGDTCGKLLACGVHSCARRCHKDDCGACLQMRVQTCRCGQYSKELPCQKEFLCENKCRRTRNCLRHPCSRKCCDGHCPPCDKICSKMLSCGKHRCPAPCHRGPCYPCPLMVSISCPCKSTSIKVPCGQERRIKGDAKRGVIVKCRKPCKLASQCQHPPRPHTCHSGECPSCREVCGRESACGHACSAKCHTSVWVKEEIEAPKKPAGPWERPQDPKIVKKCLPCPPCTTSVEVTCLGGHERSFQPCHSASPYCCGRECGRSLPCTSHFCSFPCHHVKGGSKDLEHEPALAGRNCETCNNSCLKPRPNGCSHACPLGKCHPGDCPPCKQNMKQKCHCGLTPTIFIECRKWVGALTEDSEAKKDMISVEKLLSCGSQCPKLLSCGHRCEITCHSGPCPADVHDGRLEGEEVQCTQKVRVVCPCGLLKQRRICKDVLAAAKERKDPKSLVLLECNEDCKLRKQEQTRAREESAERKRKEEERRNAEELEKFKLKQEGRRGRVRRRRDREDLEHDANFFAQHWIIISIVLTIAAVGIAIFLLVETNSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01131925;
90% Identity
-
80% Identity
-