Sstr058735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sympetrum striolatum
Gene Symbol
-
Assembly
GCA_947579665.1
Location
OX388343.1:74784089-74796634[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0011 0.38 13.9 0.1 2 23 539 561 538 561 0.96
2 16 0.0014 0.5 13.6 0.2 2 23 700 722 699 722 0.96
3 16 0.00088 0.31 14.2 0.3 2 23 727 749 726 749 0.95
4 16 0.00013 0.046 16.8 1.5 1 23 753 775 753 775 0.96
5 16 5.9e-07 0.00021 24.2 0.9 1 23 781 803 781 803 0.99
6 16 1.6e-06 0.00056 22.8 2.4 1 23 809 831 809 831 0.96
7 16 0.026 9 9.6 7.7 1 23 841 863 841 863 0.98
8 16 2.6e-05 0.0091 19.0 2.7 1 23 869 891 869 891 0.95
9 16 5.3e-06 0.0019 21.2 1.6 1 23 897 919 897 919 0.99
10 16 1.1e-05 0.0038 20.2 0.5 1 23 925 947 925 947 0.99
11 16 9.8e-07 0.00034 23.5 1.1 1 23 971 993 971 993 0.99
12 16 3.4e-06 0.0012 21.8 0.5 1 23 999 1021 999 1021 0.98
13 16 0.00016 0.057 16.5 0.5 1 23 1027 1049 1027 1049 0.97
14 16 5.5e-05 0.019 18.0 1.3 1 23 1055 1077 1055 1077 0.98
15 16 2.8e-08 1e-05 28.3 0.5 1 23 1083 1105 1083 1105 0.99
16 16 0.00037 0.13 15.4 0.8 3 23 1113 1133 1111 1133 0.98

Sequence Information

Coding Sequence
ATGCCAAATTCTGTGGAAATTCATCCTTGCTCTTTAATTCGAAATAAGAACTGCCAGATCCAAAAACCCTCCTGCGGCTCAAGAGTGGACTGCAAGATATTTCGCCCAAGTTTAAAGATTCACCACCATGAGAGCAGGGTTTTCGCTGTGAGACTTGCCGCACCATTTGGAGGGGAGGGGTGTCCCTTTGTCTACAGCGTTTATAAGTTAAGAAGGTCAGACGATGAAGATCCCCACACACCTGCGCACGCGCGACCGATACACTACACACCCCAGACAACGCGAGCGGGGCCCAACATACTTCCCACTTCGAGCGGGGGAGGTCACCAGGGACCAAGGTCAGATTCGGAGACCTTCGCTGACCAACTCGAATGTCCACAAGGCTGTAGAAGGGGTAGAACTAGCAAAAACTTTCCTATCCCGCATTTTGTTGCTCACGCTGACTCCATCATAATGACGCGGGTCCGTGACAAAGAGGACGTAAATATGTTTTTTCTGGTTATCAAATTCCGTGGCTTTACAAGGAGGAAAAGAGAGAGGTCGTTTAAAATTAGAACGCACGCCGCGACCGGAGAGAGCCAACGTGGTTCGGACGAGATGGCAGCAGCACATGCCATTTACCTATTCGTGAACCACCAAAAACCCTTCTCTCCTGCAGAGATGGAAGAAATAGATGATACTTTAGAAATAGATAATACAAGTCTATGTCGTGTATGTGCTTTAGTAAAAAATGATACAATTCCTATTTTTGGAGAGAAAGGCAGAAAATTGAGGCTTGCTAGTAAAATAAACAAACATCTTCCAATTACTGTTACAGTATGTGACAAGCTTCCTGTTGAAATATGTACTGAATGTATTTCCAAGATACAAGTGACAATCGACCTAATAAATTCTTGCGTCAAAGCTCAGCTTCAACTAGCAGAGATGTTGGTTCTGAAGGAGAAGTCGGAAGCTTCGTTCTTGAGCAAGGTAAAGCAGGAAAACGACGAATCGTTTGAAGATGATAACATAGGTGCTGATGAAATGTTTCCTGATGTTAGGATTGGTTTTCCTCAAAAACAAAATGTTGCTCAGGAAGTGGTTGAACCTTGCCTTCCTAATAATGTTCCTCCAGAGGTCGTAGCAAGTGATGGAATCTCATTACTTCCACCGTCATCAGTGTATGATACTAAGATGGAGAAAGGGGAAGCATCCAAGAAAAAGAAAATTAAAGAAGTGAATGTGAAAATTAGCAAAGAGGCACCCAAAAAACCTAAATTCCAGGTAGTTGTGGTGAAAGTGAAGAGTAATGGAGGCGTTCCTGATCATAAACAAATTGCTCAAACTTTAAGGGAATTGCACCATGATCTTGGAAAGAGGGTTGATGAAAAGGCTAATCCTGAGCTAGCCAAAGAAGGTCATGTTGTGATTGTGGATAAAACTGTAAATCTACCTGATGAGACATCCACCAATAACAACCCAGAAATAGGCAGTGATTCATTTCAGATCAAATTTGATTCATTAGAAAATGAAACTAAAGTCAATTCATCTTCAGAAAGTGTGAAATTGAAAGAGGGTGAAGAACCTCCTGTCTCTGCTGATCATTCATATACTCACTGGAACCAAAAACATATGACCTGTGGATATTGCACTGAAACATTTGTGGGCAGAATTAATCTAATATCACATCAGATGATGGCACATCCAGAAAATGTATTTTGTTGTTTTAAGTGTGACCAAGTATTTTATGATTGTAAGGAGGACTATGTGAAACATATTGAAGCACATTGTATATCGAGCAAAACTCGTTCAAGGAAAACTCAGCCTTTCAAGGGTGAGAAAGGTAAGGAGCTGAAGGAAGGAGAAGAAAATGCAAGTGGCAATACTGAGTTAAAAGTTACAGCTGTTGCAAGGGTTAGTGTGGATGAGGAAGGTAGATCCAATGAAGCCCGGGTGCTTGGACCAAAGAGTGAACAGATGAATGAACTGAAGTCAGGGCTCCGAATGAAACTTTCGAAAGAATTTGATGGAATGGATCCACTCCTGAAGAACAAAATTGTTGGTACTATACAAAAGTTGGTCCGTCGCAATAGGTCCTCTACTATGAACCGTAACTGGAGCTGCTCAGTTTGCAAATTGAAATTTGCATCTGCTGTTGCTCTAGAAACCCATCGGAGAATCAAACATGATAAGCGCATTCCTTGTCAATATTGTTCACGTCTCTACAGCTCAGAATCTGCCCTTCAGAAACACATAAATTACTTCCATGTGAAAGAATTCAAAtgcagtgtctgtgatgaacagttcaaatctagggcaatgctcaggaaacacgaattcagccattttggagagcggccatttcaatgcaacacttgcggtaagtcttacacttcccggggaagtctgcagatacacataaccactcattcgagtgagaagcctttcctctgtgataaatgtggaaaaggattcaaacatgttagtaacctgaatgctcacaggcgtactcattcggatgatccttctgttgtaaaagcacaccgctgtcacatctgtaacaaagctttccgatgccagtttcttgtcagagagcacatgcgaatgcatacaggagacaaaccatttgtctgtgagcactgcggaaaatccttttataagaagcagcaGCTCAGGCAGCACTCTGCTGTGCATGCTGCTGTACCTATGTTCAAGTGTAATGTTTGTGGTGCTAGGTTTAACCGTAAGGGTAACATGATGCAGCACCAGAAAAGGCATGGAAAAGAAGGTGTGTTTACTTGTAAAATATGTGGGGAAACCTTCTCCAGTATAGGTTTGGTTCTGAGGCACCGACGAACTCATGGAGAAGAAGCTGCAGCTGGAAATGGGAAAGGGGATCCAGAGGAACAGGATCCTGAGTTGGctatggcttttaaatgtgatgaatgtggaaagttcttgtcatccaaggtttcacttacgctccacatgagaacccatactggtgaaaggccttattcatgtgctgcctgtgggaaaagcttctcacagagtacatctttaagggtacatgaaaggacacatacaggcgagcgcccattttcctgcagtagatgttctcgagccttttcttctcgtgctgctcttactaaccacgagcgtgggcatactggagagagaccgtatccatgcaaggaatgtggtaagtccttccggtgtgcagcagctcttaaacagcatctcaccacccattctgatgaccggccttatccatgtgaatactgtggaaagcgttttagaaggaaggaggcattagaaatacaccttcgaactcatactggtgaaaggccttatggatgtaagatatgttctcggaggtttgctcagaagggggatgcaaagaaacatgaacgcacacaTGAGAAGTTGAGGCGTCAAGGGTCTCAGATTGACCTTATGGATGACTGTTCAAACAGTTATGAAGCACATCCACTTTCATTGGTAGAGATTGAGACAGAGGCTGAATCTGTTACTGAAACTTCAGTTTCATCTATGCATGCATCGCTTCAACTGGAGCATGGTATTGTGGAAGATCCTTATCCAAATCTTCCACCTGGTACAATAATTATCAACACCCAGGATCTCATGACCAGCTCTTCGGAGATAACAGTTGTAGCGGAAGAAGATCTTAACAATCATATTCTGGGGAATGGTATTTCCATCCAATATGAAGAGTCATAA
Protein Sequence
MPNSVEIHPCSLIRNKNCQIQKPSCGSRVDCKIFRPSLKIHHHESRVFAVRLAAPFGGEGCPFVYSVYKLRRSDDEDPHTPAHARPIHYTPQTTRAGPNILPTSSGGGHQGPRSDSETFADQLECPQGCRRGRTSKNFPIPHFVAHADSIIMTRVRDKEDVNMFFLVIKFRGFTRRKRERSFKIRTHAATGESQRGSDEMAAAHAIYLFVNHQKPFSPAEMEEIDDTLEIDNTSLCRVCALVKNDTIPIFGEKGRKLRLASKINKHLPITVTVCDKLPVEICTECISKIQVTIDLINSCVKAQLQLAEMLVLKEKSEASFLSKVKQENDESFEDDNIGADEMFPDVRIGFPQKQNVAQEVVEPCLPNNVPPEVVASDGISLLPPSSVYDTKMEKGEASKKKKIKEVNVKISKEAPKKPKFQVVVVKVKSNGGVPDHKQIAQTLRELHHDLGKRVDEKANPELAKEGHVVIVDKTVNLPDETSTNNNPEIGSDSFQIKFDSLENETKVNSSSESVKLKEGEEPPVSADHSYTHWNQKHMTCGYCTETFVGRINLISHQMMAHPENVFCCFKCDQVFYDCKEDYVKHIEAHCISSKTRSRKTQPFKGEKGKELKEGEENASGNTELKVTAVARVSVDEEGRSNEARVLGPKSEQMNELKSGLRMKLSKEFDGMDPLLKNKIVGTIQKLVRRNRSSTMNRNWSCSVCKLKFASAVALETHRRIKHDKRIPCQYCSRLYSSESALQKHINYFHVKEFKCSVCDEQFKSRAMLRKHEFSHFGERPFQCNTCGKSYTSRGSLQIHITTHSSEKPFLCDKCGKGFKHVSNLNAHRRTHSDDPSVVKAHRCHICNKAFRCQFLVREHMRMHTGDKPFVCEHCGKSFYKKQQLRQHSAVHAAVPMFKCNVCGARFNRKGNMMQHQKRHGKEGVFTCKICGETFSSIGLVLRHRRTHGEEAAAGNGKGDPEEQDPELAMAFKCDECGKFLSSKVSLTLHMRTHTGERPYSCAACGKSFSQSTSLRVHERTHTGERPFSCSRCSRAFSSRAALTNHERGHTGERPYPCKECGKSFRCAAALKQHLTTHSDDRPYPCEYCGKRFRRKEALEIHLRTHTGERPYGCKICSRRFAQKGDAKKHERTHEKLRRQGSQIDLMDDCSNSYEAHPLSLVEIETEAESVTETSVSSMHASLQLEHGIVEDPYPNLPPGTIIINTQDLMTSSSEITVVAEEDLNNHILGNGISIQYEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01131697;
90% Identity
-
80% Identity
-