Plon026092.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachydiplax longipennis
Gene Symbol
-
Assembly
GCA_036926295.1
Location
JAVFKF010000007.1:11835073-11840375[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00031 0.12 15.0 0.1 2 23 351 373 350 373 0.97
2 16 0.00036 0.14 14.8 0.1 2 23 509 531 508 531 0.96
3 16 0.0023 0.91 12.3 1.4 2 23 536 558 535 558 0.95
4 16 6e-05 0.024 17.3 1.5 1 23 562 584 562 584 0.96
5 16 3.4e-07 0.00014 24.4 1.1 1 23 590 612 590 612 0.99
6 16 6.1e-07 0.00025 23.5 2.2 1 23 618 640 618 640 0.96
7 16 0.00081 0.33 13.7 4.5 1 23 650 672 650 672 0.98
8 16 1.4e-05 0.0056 19.3 2.7 1 23 678 700 678 700 0.95
9 16 2.8e-06 0.0011 21.4 1.6 1 23 706 728 706 728 0.99
10 16 5.7e-06 0.0023 20.5 0.5 1 23 734 756 734 756 0.99
11 16 5.2e-07 0.00021 23.8 1.1 1 23 780 802 780 802 0.99
12 16 6.5e-08 2.6e-05 26.6 1.1 1 23 808 830 808 830 0.99
13 16 8.6e-05 0.034 16.8 0.5 1 23 836 858 836 858 0.97
14 16 2.9e-05 0.012 18.3 1.3 1 23 864 886 864 886 0.98
15 16 1.5e-08 6.1e-06 28.6 0.5 1 23 892 914 892 914 0.99
16 16 0.0002 0.079 15.6 0.8 3 23 922 942 920 942 0.98

Sequence Information

Coding Sequence
ATGGATGTTGGAGAGAGTCCAACTCTGTCTGCCCGTACAATACCAGTGGTTCAAGAAGTTTGGATTGAGTCTGGCCCCAAGGATGATGTTGCCTTTTCTTCTGATGACATTGGAGGAATAAAAGATCCATTAGTAAGTTTATGTCGTGTGTGTGCTTCTGAAAAAAAAGATGCAATTCATATTTTTGGAGAGAAAGGCAGAAAATTGAGGCTAGccagcaaaataaacaaacatctTCCAATAACCgTTACTACATCTGATAAGCTTCCTGTTGAAATATGTATGGAATGTATCTCCAAGATCCAAGTGACTATAGACCTTATAAATACTTGTGTCAAGGCTCAACAACAACTTGCAGAGTTGCTGGTTCTCAAGGAGAAGTCAGAGGCTTCATTATCAAGCAAGGCATATCAGGAAAATGATGAATCAATTGAGGATGATAACATAGGTGCTGATGAAATGTTTCCTGATGTAAGGATTGATTTCCCTCAAAGAACAAGTGATGTTGCTCAGGAAGTAATTGAACCTAGTCCTCCTGAAAATGATTCAGAGATTATAGAAAGTGGTGAAAGGTTAGTAATTCCACTATCATCAGCATATGTTCTGCAAGAGGAGGAAGGGGATGTGTCCaagaaaaagaaactcaaaGAACTGAATGTAAAGATCAACAAAGAGATGCCCAAAAAACCTAAATTCCAAGTAGTTGTGGTGAAAGTGAAGAGTAATGGAGGAGTTCCTGATCATAAACAAATTGCTCAAACTTTAAGGGAATTGCATCATGATCTTGGaaagaagaatgatgaaaaAATTAATCCTGAGCTAGCCAAAGAAGGTCATGTTGTGATTGTGGATAAAACTGTAAATCTACCTGATGAGACATCCACCAATAATAACACTGAAAGCTGCAGTGattcatttaagataaaatttgattCATTGCAAAATGTAGCTGAATCCAATTCATCTTCAAAAACCAAAACGTTGAAAGATGGTGAAGAACCTCCTGTCTCTGCTGATCATTCATATACACACTGGAACCAAAAACATATGACCTGTGGGTATTGCACTGAAACATTTGTGGGTAGAATTAATCTAATATCACATCAGATGACAGCACATCCAGAAAACGTATTTTGCTGTTTTAAGTGTGACCAAGTATTTTATGATTGTAAAGAGGATTATGTTAAGCATATAGAAGCACATTGTATATCAAGTAGTACCCGTTCAAAGAAAACTCAGCCACTTACAGGTGTTGAGGtgaaggaaaaagaaggaaatgcaAGTGGAAACACTGAGTTGAAAGTGACAGCTGTTGCAAGGGTTAGTGTTGATGAAGAAGATAGATCTGAGGAAGTCAGGGTGCTTGGACCAAAGAGCGAACAGATGAATGAATTGAAATCAGGACTCCGAATGAAACTTTCAAAGGAATTTGATGGAATGGATCCACTTCTGAAGAACAAAATTGTTGGTACTATACAAAAGTTGGTGCGTCGCAACAGATACTCTAGTATGAACCGAAATTTAAGTTGCTCAGtatgtaaattgaaatttgcaTCTGCTGCTGCTCTGGAAGCTCATCGCAGGATCAAACATGATGAGCGAATTCCCTGTCAATACTGTTCACGTCTTTGTCGCTCAGAATCTGCCCTTCAGAAACACATAAATTACTACCACGTGAAGGAATTCAAATGCAGTGTCTGTGATGAACAGTTCAAATCTAGGGCTCTGCTCAGGAAACACGAATTCAGCCATTTTGGAGAGCGGCCTTTTAAATGCAATACTTGTGGTAAGTCATACACCTCCCGGGGAAGCCTACAGATACATATAACCACTCATTCAAATGAGAAGCCTTACCTCTGTGATAAATGTGGAAAAGGATTCAAACATGTCAGCAACCTTAATGCTCATAGGCGCACACATTCAGATGATCCTTCTGTTGTGAAGGCACACCGCTGTAACATCTGTGGCAAAGCTTTCCGCTGCCAGTTTCTTGTGAGAGAGCATATGCGGATGCACACAGGGGACAAGCCGTTTGTCTGTGAGCACTGTGGAAAATCCTTTTATAAGAAGCAGCAGCTCAGGCAGCACTCTGCTGTGCATGCTGCTGTACCTTTGTTTAAGTGTAATGTTTGTGGTGCTAGGTTTAACCGTAAGGGCAATATGATGCAGCACCAGAAAAGACATGGAAAAGAAGGTGTATTTACTTGTAAAATATGTGGAGAAACCTTTTCAAGTATTGGTTTGGTTCTGAGACACCGAAGAACCCATGGAGAGGAAGCTGCTGTTGGAATTGGGAAGGGGGATCCAGAGGAGCAGGACCCTGAGTTAGCTTTGGCATTTAAATGTGATGAATGTGGAAAGTTCCTTTCATCCAAGGTTTCCCTTACTCTTCATATGAGAACCCATACTGGGGAAAGGCCTTACTCATGTACTGTATGTGGGAAAAGTTTCTCACAAAGTACATCATTGAGGGTACATGAAAGGACACACACTGGTGAGCGCCCATTTTCCTGCAGTAGATGCTCTCGAGCCTTTTCTTCTCGTGCTGCTCTTACTAACCATGAGCGTGGGCACACTGGAGAGAGGCCATATCCATGCAAAGAATGTGGCAAGTCCTTCCGGTGTGCAGCAGCTCTGAAGCAGCATCTCACAACCCACTCTGATGACCGGCCTTATCCATGTGAGTACTGTGGAAAACGTTTCAGGAGGAAGGAGGCATTAGAAATACACCTTCGAACACATACTGGTGAAAGACCTTATGGATGTAAGATATGTTCAAGGAGGTTTGCACAAAAGGGTGATGCAAAGAAGCATGAACGCACACATGAGAAGATAAGGCGTCATGGGTCACAGATTGAACTTATGGATGACTGTTCTAACAGTTATGAGGAACATCCACTTTCCTTGGTGGAGATTGAGACAGAGGCTGAATCTGTTACCGAACCTTCAGTTTCATCTATGCATGCATCACTTCAATTGGAGCATGGCATTGTGGAAGATCCTTATCCAAATCTCCCACCTGgtacaataattattaatactcAGGATCTTATGACCAGCTCATCGGAGATAACAGTTGTGGCAGAAGAAGATCTTAACAATCATATTCTGGGGAATGGTATTTCCATCCAATATGAAGAGTGCTAA
Protein Sequence
MDVGESPTLSARTIPVVQEVWIESGPKDDVAFSSDDIGGIKDPLVSLCRVCASEKKDAIHIFGEKGRKLRLASKINKHLPITVTTSDKLPVEICMECISKIQVTIDLINTCVKAQQQLAELLVLKEKSEASLSSKAYQENDESIEDDNIGADEMFPDVRIDFPQRTSDVAQEVIEPSPPENDSEIIESGERLVIPLSSAYVLQEEEGDVSKKKKLKELNVKINKEMPKKPKFQVVVVKVKSNGGVPDHKQIAQTLRELHHDLGKKNDEKINPELAKEGHVVIVDKTVNLPDETSTNNNTESCSDSFKIKFDSLQNVAESNSSSKTKTLKDGEEPPVSADHSYTHWNQKHMTCGYCTETFVGRINLISHQMTAHPENVFCCFKCDQVFYDCKEDYVKHIEAHCISSSTRSKKTQPLTGVEVKEKEGNASGNTELKVTAVARVSVDEEDRSEEVRVLGPKSEQMNELKSGLRMKLSKEFDGMDPLLKNKIVGTIQKLVRRNRYSSMNRNLSCSVCKLKFASAAALEAHRRIKHDERIPCQYCSRLCRSESALQKHINYYHVKEFKCSVCDEQFKSRALLRKHEFSHFGERPFKCNTCGKSYTSRGSLQIHITTHSNEKPYLCDKCGKGFKHVSNLNAHRRTHSDDPSVVKAHRCNICGKAFRCQFLVREHMRMHTGDKPFVCEHCGKSFYKKQQLRQHSAVHAAVPLFKCNVCGARFNRKGNMMQHQKRHGKEGVFTCKICGETFSSIGLVLRHRRTHGEEAAVGIGKGDPEEQDPELALAFKCDECGKFLSSKVSLTLHMRTHTGERPYSCTVCGKSFSQSTSLRVHERTHTGERPFSCSRCSRAFSSRAALTNHERGHTGERPYPCKECGKSFRCAAALKQHLTTHSDDRPYPCEYCGKRFRRKEALEIHLRTHTGERPYGCKICSRRFAQKGDAKKHERTHEKIRRHGSQIELMDDCSNSYEEHPLSLVEIETEAESVTEPSVSSMHASLQLEHGIVEDPYPNLPPGTIIINTQDLMTSSSEITVVAEEDLNNHILGNGISIQYEEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01385039;
90% Identity
-
80% Identity
-