Basic Information

Insect: Sympetrum striolatum
Gene Symbol: UBTF
Assembly: GCA_947579665.1
Location: OX388343.1:86649952-86659686[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.7e-21 1.2e-17 66.7 5.8 1 68 179 246 179 247 0.97

2 4 4.2e-05 0.19 14.9 4.3 3 68 273 333 271 334 0.77

3 4 4.5e-07 0.002 21.2 0.8 2 68 366 430 365 431 0.84

4 4 9.5e-06 0.043 16.9 1.5 4 68 519 579 516 580 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.7e-21	1.2e-17	66.7	5.8	1	68	179	246	179	247	0.97
2	4	4.2e-05	0.19	14.9	4.3	3	68	273	333	271	334	0.77
3	4	4.5e-07	0.002	21.2	0.8	2	68	366	430	365	431	0.84
4	4	9.5e-06	0.043	16.9	1.5	4	68	519	579	516	580	0.82

Sequence Information

Coding Sequence: ATGGTTTTAGACCGGAAAAAACGCTCGGCCCCGCAGCCGGCCGAAGCGTCTGAAAATCCCGCTAAAAAACACAAAGGTGATGAGTCTCGTGTACCACCTCCTGTTCCTGTGAACCCCAAAGAAGGGAAGGACAGCAAAAGTAAGAAGAAAGCTTCGGAAAAAATACGATCTGTCAAGACCGATCAGGTGGACGAGCATGCGGAAGTAGTAGTTGTTCCAGCTAAGCCGGACAACAGTAATGACATTCCTTCGTGGCCAGAGGATCATCTCTGGGAATTGATGAAGAGAATGGAAAAGTCAATTCCAGCTCGTGACTCTCTGCGGTATGACTCACGAGTTGAAAAATTAGACTGGGAAGAGGTCAGATTTGGCGCTTATACCGCAGCTGAGTGCAAAGAAATGTGGAATAAAATTCAAAAACGCCTTCGCCGATATAGGCTTCTTCGAGAGTTGCTTGAAGATGCTAAGACTTGGGTTACCCAGCCTTGGACCAATTTTTATCGTAGTACCAAACAGAATCGTCATCCAGATCTTCCCAGGAGGCCCCTTTCTACGTATATGCTATTTTATCTTGAAAAGAAAGACAGAGTAGCAAAGGAGCATCCTGGATTAGAGATGACAGCAGTATCCAAACACATAGCAGCTATGTATAAGAATTTGTCTAAGAAGAAAAAACAAAAATACATTGACAAAGCAGCAGAAGAAAGGAGAGAGTATGAGGAAAAATTGGAGGAATTTTACCGCATACACCCAGATATGGTACCTAAAAGTACTCCAAAGGATAAGCCACCACCTCAAATGGAGCCAGGTCCAAGAAGACCATGTACCCCATTCAAGCTCTACTACTTAGAAAAGCTAAAAACTCACCGGGATGATCCTGATTTTAGACAAGAAAAGTGTAAAGAGATGTGGAAGGCTGTTAATGATAAGAAAAAGCTCATTTGGATTAATAGAGCTCTTGAGGATGAAACCCGCTATCAGGCGGAACTAAAGGAATATATGAAAGAGAATCCAAATTTTGTCCCTCCACCTCTCAAACCCGTACTTACCAAAGATGAAAAACAATTAAAGGAGAGATTGGCTGGGAAACCAGAGAAGCCTCCTAACTCAGGTTACAGTTTATTCTCTCGAATAATGTTAGGCAGTGAAGAAATGAAGAAATATTCTTCTAAAGGAAGGATGCTTGAAATTTCAAAAATGTGGAAAGATCTTTCAGTTACCGACAAGAAGAAGTACCATGATAAGGTTCAGCAAATGATTGATCAATATAAATTAGAATATGCCACTTACTTAGAGTCTTTACCAGAAAATGAAAGGAAGGAAGAATTATTGCTGACTACTCATAGAAAGAAGAAAGTGACTCAAGAGAAGCCGGTTGTGGAGAAGCCAGCACCTGTAATCAAGGCGAATAATGTAGTTGCTCCTAAACCAGCTCCTCCTCCTCCTCCTCCAAGCAGAAAGAATCAAGAAAAGGAAGCTCCTCCTCCACCAAAAGATAAAAAGGCCAAGAAGGAATGGAAGCAAGTTCTATACCAAGGAGAACCTGAGCCTCCACCAGTTACTGCGTTTCAATTATTTCTCAAGTCCTTCATGAGTGATGCGACACACATACCTCCTGCAATGAGAATGAAAGAAGCTCCGAGGTATTGGGAAATGTTACCAGAAAGTGAGAAGGCTAAGCATAGGAAAAAGCTAGGCGAGCTGAAGCAGAAGTACATTGCCAACTATGAAAAGTTTCTGAAGGGATTATCTCAagagcagttgaaagaatactcaacactgaagtctaataaacgctatgaagaaatgaaggaaaaggaggattcagatgatgaggatgatgatgatgacgacgatgaaggagatgacgatgacgaagatgacgacgatgatgaggatgacgatgatgaaggaagagagggtgagagcgtcgatggaagaggggatgagagagacggcgctaaggaaagtgatgatgaagaagatgaaaattgccaaaaaaatcaagcaaATGAGGGATCAGATTCCAGTGAAGAGTCCTCGTCTGGAAGTGATAGTGACTCTGACTCCTCAGATTCAGGCTCAAACAATTCAGACTCTGAATCAGATGCTTCTAATTCAGATTGA
Protein Sequence: MVLDRKKRSAPQPAEASENPAKKHKGDESRVPPPVPVNPKEGKDSKSKKKASEKIRSVKTDQVDEHAEVVVVPAKPDNSNDIPSWPEDHLWELMKRMEKSIPARDSLRYDSRVEKLDWEEVRFGAYTAAECKEMWNKIQKRLRRYRLLRELLEDAKTWVTQPWTNFYRSTKQNRHPDLPRRPLSTYMLFYLEKKDRVAKEHPGLEMTAVSKHIAAMYKNLSKKKKQKYIDKAAEERREYEEKLEEFYRIHPDMVPKSTPKDKPPPQMEPGPRRPCTPFKLYYLEKLKTHRDDPDFRQEKCKEMWKAVNDKKKLIWINRALEDETRYQAELKEYMKENPNFVPPPLKPVLTKDEKQLKERLAGKPEKPPNSGYSLFSRIMLGSEEMKKYSSKGRMLEISKMWKDLSVTDKKKYHDKVQQMIDQYKLEYATYLESLPENERKEELLLTTHRKKKVTQEKPVVEKPAPVIKANNVVAPKPAPPPPPPSRKNQEKEAPPPPKDKKAKKEWKQVLYQGEPEPPPVTAFQLFLKSFMSDATHIPPAMRMKEAPRYWEMLPESEKAKHRKKLGELKQKYIANYEKFLKGLSQEQLKEYSTLKSNKRYEEMKEKEDSDDEDDDDDDDEGDDDDEDDDDDEDDDDEGREGESVDGRGDERDGAKESDDEEDENCQKNQANEGSDSSEESSSGSDSDSDSSDSGSNNSDSESDASNSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131522;
90% Identity: iTF_01131522;
80% Identity: -