Snob005530.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- Trl
- Assembly
- GCA_027564815.1
- Location
- JANTOP010027339.1:1-2911[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5 1.4e+04 -3.6 0.3 5 11 138 144 134 155 0.64 2 3 2.6e-30 2.5e-26 91.6 1.4 13 54 217 258 205 258 0.94 3 3 0.75 7.2e+03 -2.7 0.0 18 29 295 306 285 309 0.68
Sequence Information
- Coding Sequence
- AATACGCCATGTAAGCATCCGGTTGTTATGTTGGCTGGTGTAAACGCCAACGATTTGGAGGCACTACTTGAATTTGTTTATCGCGGAGAAGTGAGTGTCGATCATTCTCAACTGCCGTCACTGTTGCAGGCAGCCCATTGCCTAAATATTCAAGGCTTGGCTCCACAAACGGTAAGCAAAGATGATTACACAACATCAATTCAATTGCATCCGTCATTATTGCCGCAACATCATGTTAAGATTGATATGAATGGAATGAACGAGGAGCTAATAACTACTATTCAGGAGTCACCGCCACATCAAACCGTTCAGGCTCATGTCGTGGAAGAAATTTTGCCACATTCATTGACTGAAGTAAGTGACGTAAAAGATGTAATAAGTCAATTTTTGCCAGCACGAAAACGGAAGCCGCGCGCAAAGAAACCTACCCAAGTGGCTAAATTACCACGTCTGTCAAATGACCCAAATCAACAAATCCAGACCCAAACCCAAATCCAAAACCAAATTCAAACTCAAATGCAAACCCAAACTCAAATCCAAATTCCATCGCCGGAAATAATAACACCATCGACACCCCCACCTACTATGGTAACGGAAACTGTAACTGAAGTTAAAACGGCTAATGACAAAACACCTGATCAACCCATACCAAAACCGAAATCGCGGTCACAGTCGGAACAACCAGCCTCCTGCCCCATATGCGGTGCAGTAATTCGCCAATCTCGAAATTTGAGACGTCATTTGGAGTTACGCCATTTCTCGAAACCGGGAGTTAAGAAAGAAAAGAAAAATCCATCGGGTAATCAAACCATACAAACCGTTCAAACAGTTCAATCTGTACAAACGATTAATGTGAAGAAAGAACCGGGCGAGGATACGATGGCTTCGACATCGGGACAACCACACACCATATCTGTTTCGTTGGCACCGAATCCAGGTGAAGCGCAATTAGTCGATGCCACTCATCTATCCGATAATGGGCAGCATATAGTGACACAGCATGAGAATACGGATGGCACAACATCGCTCTCTATTGCCCAGGTGCAAACATTGCAAGGCCATCATCAATTAACCCTTCAAAATTTAAATCAG
- Protein Sequence
- NTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHSQLPSLLQAAHCLNIQGLAPQTVSKDDYTTSIQLHPSLLPQHHVKIDMNGMNEELITTIQESPPHQTVQAHVVEEILPHSLTEVSDVKDVISQFLPARKRKPRAKKPTQVAKLPRLSNDPNQQIQTQTQIQNQIQTQMQTQTQIQIPSPEIITPSTPPPTMVTETVTEVKTANDKTPDQPIPKPKSRSQSEQPASCPICGAVIRQSRNLRRHLELRHFSKPGVKKEKKNPSGNQTIQTVQTVQSVQTINVKKEPGEDTMASTSGQPHTISVSLAPNPGEAQLVDATHLSDNGQHIVTQHENTDGTTSLSIAQVQTLQGHHQLTLQNLNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01383771;
- 90% Identity
- iTF_01383771;
- 80% Identity
- iTF_01383771;