Snob005198.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Symmerus nobilis
Gene Symbol
Hr39
Assembly
GCA_027564815.1
Location
JANTOP010016956.1:1313-3754[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.41 3.9e+03 -3.0 0.8 142 159 27 44 3 116 0.54
2 5 0.34 3.3e+03 -2.8 8.7 68 133 241 333 211 384 0.44
3 5 3.5e-08 0.00034 20.3 0.1 1 21 459 479 459 484 0.90
4 5 0.00019 1.8 7.9 1.8 57 145 484 570 478 582 0.74
5 5 8.2e-47 7.9e-43 147.5 0.4 203 327 587 706 573 721 0.92

Sequence Information

Coding Sequence
ATGTCAACtactgctggcagtagtacgaatagtagtactaacagtactactagtacagcattagCGAACGCGATACGACCGAACGTATCTGTGACAAGTATTAATTGTGACACATCGGTAATAACTGGAACGACAACCCAAATACCGGTCACCACACCAAATGAATCTCGAGATCCATTAAATGGTTCGACAGGAAATTCAACAATAAAGCGACCGAGCGGTTCAGCGTCCCCATACTTTGGTAATGGCAGCATACGCATATCCGTACCGAAAATGGAAGAATCCGATGAATCGGATGCTGAATTATCGAACATTGAGCGTACGGTAAGCGTGGTAAATATGCGTAAAGGTAATAAATTATCAGGACCACGTCCGATGTCTTGGGAAGGTGAACTATCCGAACATGAAGATTCGATGGATGTTGAGAATGCTGCGACAGCCTTAGATTTATATAAAATGCAATATGTTAATGTTAACGCAACAAATCATTCGAATGCCGTACCGGATGATACAAAGAATGGAATCCATTCGTTGAAGATAATTCCAAAGGAAGCCATAAAACCGGAATATTGTGAACCAACCGGTGAATTGAATGGTACACATCCGGTACCGTTAAATAGATGTCCGAAATATTCAACCCCCCTTGAACCGATCGTTCAACTGAAATACGAACCAGGACTTCCACAACAACATCAACTTACCCCGCCAGTTGATGCCTTAACTTCCAATCACCATCACTCGTTAAACTCACCACTATTAGTACGATCGAAAACGACACTATTACCGGCCAATCCAAGTCCCGATTCAGCTATCCATTCCGTTTATACACACAGCTCGCCATCACAATCACCGCTAACATCACGTCACGCTCATTATACACCAACGTTAAGCCGTAATAATAGCGATGCATCGCATAGCAGTTGCTATTCGTATAGTTCTGAATTCAGTCCGACCCATTCACCAATTCAGAGCCGCCATCATATGTATCAAACGTTTAATGGGTCCCCATTCCATCATTCCACAATGTATCGTCCGATGATCGGTGAATCGGTACCGGTTACCGAATCGAAACATTCAATGGGACAACCGATTGGTGATGAATCACTGTTAGATAGTGAAGCGTTGCCATCTGCCGGAATTTCGAGGCAACAATTGATTAACAGTCCATGTCCAATATGTGGCGATAAAATATCCGGTTTCCATTACGGTATATTCTCCTGTGAATCGTGTAAAGGGTTCTTTAAGCGAACGGTACAGAATCGAAAGAATTACGTTTGTTTACGGGGTGCCGCGTGTCCAGTAACAATTGCCACCCGAAAGAAATGTCCTGCCTGTCGTTTCGATAAATGTTTACAGCGTGGCATGAAATTGGAAGCGATTCGAGAGGATCGTACACGTGGCGGTCGATCAACGTATCAATGTTCGTATACGATACCGACGCAAGCCAATACTGTGATGCCAATGTTAACTACCGCCGATAGTTTTAATCATTTAAAAACTATTACGGCACCAACATTTAAGGTTGAATGTTCGGATGGGAGTAACAGTAGTAGTTCGCATCTACGACAAAATATTCCAACCCTTTTACAGGAAATGATGGACGTTGAACATTTATGGCAATTCAATGAATCCGAATTGTCCCGATTGAATCAAACAGACAGTTCATCAAGTCAACCGTCTTCATCCGCCAATCAGCAACCATCTCGTATGAAACCCAGTGCCAATCCGTTACTGGCTAGTGCTGGCTTAACGGAAAATGAGGAAACGAATCCGGATGTTATAGCAAATTTATGCAATGTAGCCGATCATCGATTGTATAAAATTGTTAAATGGTGTAAAAGTCTTCCATTATTTAAACATATAACTATTGACGATCAAATATGCCTGCTAATTAATTCTTGGTGCGAACTTTTAGTATTTTCCTGCTGTTTTCGATCGATGTCAACGCCAGGTGAAGTACGAATTTCATTGGGGAAATCTATAACATTAGAACAGGCGAAGTTGAATGGGTTACAGCCTTGTATTGAGAGAATGTTAAATTTAACCGATCATTTGCGACGATTGCGAGTCGATCGGTACGAATATGTTGCCATGAAAGTGATTGTTCTCTTGCAGTCGGGTAAGTGTTCGGAATTTTTCATTTATTTAAAATGTCAAAGGGCAACATCATCTAAATGA
Protein Sequence
MSTTAGSSTNSSTNSTTSTALANAIRPNVSVTSINCDTSVITGTTTQIPVTTPNESRDPLNGSTGNSTIKRPSGSASPYFGNGSIRISVPKMEESDESDAELSNIERTVSVVNMRKGNKLSGPRPMSWEGELSEHEDSMDVENAATALDLYKMQYVNVNATNHSNAVPDDTKNGIHSLKIIPKEAIKPEYCEPTGELNGTHPVPLNRCPKYSTPLEPIVQLKYEPGLPQQHQLTPPVDALTSNHHHSLNSPLLVRSKTTLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAHYTPTLSRNNSDASHSSCYSYSSEFSPTHSPIQSRHHMYQTFNGSPFHHSTMYRPMIGESVPVTESKHSMGQPIGDESLLDSEALPSAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVTIATRKKCPACRFDKCLQRGMKLEAIREDRTRGGRSTYQCSYTIPTQANTVMPMLTTADSFNHLKTITAPTFKVECSDGSNSSSSHLRQNIPTLLQEMMDVEHLWQFNESELSRLNQTDSSSSQPSSSANQQPSRMKPSANPLLASAGLTENEETNPDVIANLCNVADHRLYKIVKWCKSLPLFKHITIDDQICLLINSWCELLVFSCCFRSMSTPGEVRISLGKSITLEQAKLNGLQPCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSGKCSEFFIYLKCQRATSSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01383708;
90% Identity
iTF_01383708;
80% Identity
iTF_01383708;