Snob013123.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_027564815.1
- Location
- JANTOP010001907.1:2427-4536[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.68 1.3e+04 -4.8 2.8 44 90 133 179 118 188 0.50 2 2 2e-110 3.8e-106 354.9 32.7 1 300 207 493 207 493 0.93
Sequence Information
- Coding Sequence
- ATGGATGACGAAATAATTGATAATGCGACCGCAAAGCCAAAATTAACTGAATTTAATACAAATAATTTAACAAAAATTGTGTCATCAAATGAATTGAAAGTGAAAACAGCATCAATGGACAATGTGAATGAAAACGACGACGACACGCATGAATTGTTCGATTTTAGTTCAAGCGATTTGGGTGATAGTGGCGATGACGACAACGACAGTGGCACAGAAAATTGTGATAATGATCAAAGTGTTGCGTTGAAAAATGAAAAGAATGCCATTATCGAAACATTTAATCCGATAACAATTGAGGGAAAATTGATAACGGAATTAAGTCCAGTGAATTCATTATCCACCTCACCGCTATCACATGAATCCGATTCAATGAAATCGGTGAACAATTCTCTGTCGCCCGAATCCGATTTGAATACATCGATAGTCGATTGCAGGAATTTAACAATAACGGAGTCGGAATACAATACAACACGATCCACAATGGATAGCTTACAGAATAATTCTGATAGTTTTGATGGGCGACGACATCGTCACAGTATCACGAATGACGAGGACGAACATAGTGATGGTAGCGATGAAGTTTTGGTTAACTTTTTGGGGAAAGCGAATGAAATAGCCGAAGCAAGGTTGGCGCAACGTCGGCAAGCCCGTGCCGAGGCCCGTGAAATTCGGATGAAGGAATTGGAACGGCAGCAGAAGGAGCAGGAACAAAATGCGGATCGGGTGTTCGATATGCAAACGGCGGCCGGTATCGATCCAATAGCTCGGTCACGCTTAGCCATGTCTGGTGTACCGGGAACGTTACGTGCCACCTCAATGTCATCACGACGAAGTAGCGAAGATTCGTTGGAAGAGGAGGGCCGTAGTCTTCGGGATATACGACATGAATTAAAGGACGTTGAGGAACGTTTCCGTAAAGCAATGATAGCAAACGCCCAATTGGACAACGAACGATCATCACAATCCTATCAAATCCAATTACTGAAAGATAAATTGGAAGATATGGAGGAAGCGCATGCCCAACTACAACGTGAACATAAAGATAAATGCCGTGATCATGATGCCTTAAAACGAAACAATGATAAATTAACGGAAGAACTGAAATTGGTACAGGGACAATTGAATGAGCGTGACACATTAATCACCGAACATGGTATGACAATTGTAACGATTGAAAATGATGATGGGACCGATGCCCATCGAGCTCTAGTCAGCGTTGATAATGCCCAATTATTAGATTCTATTCAAGGTTCTTTAGATGTACGACTTAAAAAGTTTGCTGCCGATAAACAACAATTGAAACAGGAAGTTCAACAATTACAACAACAATTATCCGATGCTCGAACGACAAGACGTTCCGGGTCGATGAACGGACCTACCGGTGATGATGATTTTGAAGATGCCCAACGTGAAGCCAATAAATTAATATCAGACTATAAATATAAATTACAAAAAGCTGAACAGGAAATAGCTACTTTACAAGCGAGCTTAACTCGATACGAAACACAGGTGATTAGATATAAAAGTACTGCAGATTTATCGGAAAAAGCTGAAGCTGACTTGAAAGTGGAGAGAAGGAAACTGTTGCGAGAGCCACTACTTATTCATGTTTGGGACGAATGTCATCTGCAATAG
- Protein Sequence
- MDDEIIDNATAKPKLTEFNTNNLTKIVSSNELKVKTASMDNVNENDDDTHELFDFSSSDLGDSGDDDNDSGTENCDNDQSVALKNEKNAIIETFNPITIEGKLITELSPVNSLSTSPLSHESDSMKSVNNSLSPESDLNTSIVDCRNLTITESEYNTTRSTMDSLQNNSDSFDGRRHRHSITNDEDEHSDGSDEVLVNFLGKANEIAEARLAQRRQARAEAREIRMKELERQQKEQEQNADRVFDMQTAAGIDPIARSRLAMSGVPGTLRATSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEDMEEAHAQLQREHKDKCRDHDALKRNNDKLTEELKLVQGQLNERDTLITEHGMTIVTIENDDGTDAHRALVSVDNAQLLDSIQGSLDVRLKKFAADKQQLKQEVQQLQQQLSDARTTRRSGSMNGPTGDDDFEDAQREANKLISDYKYKLQKAEQEIATLQASLTRYETQVIRYKSTADLSEKAEADLKVERRKLLREPLLIHVWDECHLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -