Sfus012576.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- bab1_3
- Assembly
- GCA_026546915.1
- Location
- JANSTS010006976.1:9927-13988[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-17 9.1e-14 50.6 0.0 2 45 526 570 525 570 0.95
Sequence Information
- Coding Sequence
- ATgtcgatgcaacagttttgcttgcgatggaataaccatcaaccaaacttcatttcggtgttctcatcgctgcttcacaatgaggcactggtggatgtgacactagccgctgagggtcgtcaattgcaggcccacaaagtggtgctgtcagcatgtagctcatattttcagAGTCTTTTCACATCaaatccgtgtcaacatcccatcgtcattcttaaggatgttcaatatagtgatttaaaaacaatggttgactttatgtactatggtgaagtgaatgtgtcacaagatcagttgccacatgtcctcaagacggctgaaatgctgaagattaagggactggccgagatgccggagggtgcgtcagtgacaaagacagAAAACAATTGCGAACAAACGGAACAAttgacatcgggcagcggcaccgactccatgtggggcagcaacgagtctcagcaacaatatcaacagcaacaacaacagatgcgacgatcgccatcaCCCGCTGGCGGTGTTGTTCTATCGACACCGTCCGCCCAAACGTCAACAGCCACCCGACGAAAGCGTCTGCGCAAGGCGTCCACCGGCTCCGGCTCGGCTGATCGCACCTCGGACGAACACATCGACAATGGGGCGACTGTCGCCACATTGGGTCTGTCACAGATCGATCCGATGTTTGGCGGTGGTGCTGGCGCCACATCGTCAGGCGGTAATCTCGTTCAAAATATGACCAATCCGGTAAAAATCCTCAaggagagttcaaatagcgacaacgagggccaccaccagcatcatcaccatcaccatcatcagcaccatcagcatcatgactcgtcgcaggagggcggcagcgccgatgaccaccatctgcagcagaatgttattCAAATGCCGATTGAAATCACCGGATCTACAACGCCCACGGACCACGGCGGAGGGGCGACCGTTGTCACGTGCTCACCACAGCAGCAAACGCACGGTGGTGTGCAATGGACGGTGGTCGACTCGGGTTATCCGCGTTTTGCATTATCCAATGCACCAACGACCACAACGACTGCGGTAGCCACAAATAACATCGGCCTGTCGGCCAGCGACGGCTCTGTGGACGGCAGCGGCGCCTCCAACCAGCAGCAGACGAACGCGGCGGCGGCATCGGCAGCGGCGGCGGTCGCACAAGCAGCCGCCGCCGTGGCCGCGGCCGCACAAACCACACAAATAATGCAATATCAAACTAGCGGCAGTGGCGCCGGCTCCAACGGCACCAATTCCTATTCCCCGCAAATAATCTCCGTGAATCCGAACAACATTGGCTACCACCATCAGACATCAACCGAGCCACAATCGCCCCAGCATGCACACCACATCCACCATCATCATCACGATAGCGACATGATACAGACGGTGTACAcgcacagcacgcccaatcagtcgccaaccacccaacagcagcaacagcaacagcagcaggtgcaggtgcaacagcagACGCAgacgccgcgacAAAACGCCAATGCGACTAACGCCGGCAGCGCTGGCCAGCCGACAAAGCGAAAACGTTCCGTGAATCCGCAAGGCGATGAGAATTTCCTGCGCGCCCTCGACGCCGTCCGCTTCGGCGGCATCGGCTTCTGCAAGGCGGCACGTCTCTACGGCGTCAACAATCGAACACTGTGGCTGGAGTACAAGAAACGCGGCTACCCAATCAGTCGACCGTCAATCAAAAACCGTATCAAACTAGAGAATATGACACCACCGCCGCCATCCACGCCGACCAACGAAGAGAACACCTCAATGGAGACGTACGAACAGAATATACAGCAGCAGCAAGTCCTGACCACCACCACCGAGGCGCAAACGTCGATTATGTGCGCACCGCCGCATGCACATCCGACAACGGGCGGCGGCACACCCACGGCCATGGGCGTCATGAGTTTTTTAGACGCACGACACGTTGAATTTCCGATGGCGGCGCCCGTCTCATCGTCCAGCACGTCGGTGCGGACGCGGTATCCAACGGCTACCGTCGTCGACGGCTCCGCCGTCAATGTTAATGCCACCACCATGAACATACAGGGGATCAACTTTAACACAATGTAG
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLHNEALVDVTLAAEGRQLQAHKVVLSACSSYFQSLFTSNPCQHPIVILKDVQYSDLKTMVDFMYYGEVNVSQDQLPHVLKTAEMLKIKGLAEMPEGASVTKTENNCEQTEQLTSGSGTDSMWGSNESQQQYQQQQQQMRRSPSPAGGVVLSTPSAQTSTATRRKRLRKASTGSGSADRTSDEHIDNGATVATLGLSQIDPMFGGGAGATSSGGNLVQNMTNPVKILKESSNSDNEGHHQHHHHHHHQHHQHHDSSQEGGSADDHHLQQNVIQMPIEITGSTTPTDHGGGATVVTCSPQQQTHGGVQWTVVDSGYPRFALSNAPTTTTTAVATNNIGLSASDGSVDGSGASNQQQTNAAAASAAAAVAQAAAAVAAAAQTTQIMQYQTSGSGAGSNGTNSYSPQIISVNPNNIGYHHQTSTEPQSPQHAHHIHHHHHDSDMIQTVYTHSTPNQSPTTQQQQQQQQQVQVQQQTQTPRQNANATNAGSAGQPTKRKRSVNPQGDENFLRALDAVRFGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKNRIKLENMTPPPPSTPTNEENTSMETYEQNIQQQQVLTTTTEAQTSIMCAPPHAHPTTGGGTPTAMGVMSFLDARHVEFPMAAPVSSSSTSVRTRYPTATVVDGSAVNVNATTMNIQGINFNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01383010; iTF_01382012; iTF_01382179;
- 90% Identity
- iTF_01383010; iTF_01382012; iTF_01382179;
- 80% Identity
- iTF_01383010;