Scin011908.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- bab2
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:26082299-26087269[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-17 9.9e-14 50.5 0.0 2 45 534 578 533 578 0.95
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAGTTTTGCTTGCGATGgaacaaccatcaaccaaatTTCATTTCCGTGTTTTCGTCGCTGCTGCACAATGAATCACTTGTAGATGTGACGCTGGCTGCGGAAGGGCGGCAATTGCAAGCTCACAAAGTGGTGTTATCAGCATGTAGTTCATATTTTCagAGTCTTTTCACAACAAATCCATGTCAACATCCCATCGTTATTCTCAAGGATGTCCAATACAGTGACTTAAAAACAATGGTCGACTTCATGTATTACGGCGAAGTAAACGTGTCCCAAGATCAGCTACCGCATGTCCTCAAGACGGCCGAAATGCTAAAGATTAAAGGGTTGGCTGAGATGCCCGAGGGTGCGTCAGTGACAAAAACCGAAAACAGTTGCGAACAAACAGATCAATTAACATCAGGCAGCGGCACTGATTCCATGTGGGGCAGCAACGAATCTCAGCAACaatatcaacaacaacaacagcaacaacaacaaatgcgACGATCACCGTCACCCGTGGGTGTCGTCTTGTCATCACCCTCTACCCAAACGACCACGGCCACACGGCGAAAGCGACTGCGTAAAGCCTCCACCGGCTCCGGTTCGGCAGATCGCACTTCGGATGACCAACACATTGACAATGGAGCGAGTGTTGCTACATTAGGACTGTCACAAATTGACCCGATGTTTGGGGGTGGTGCTGGCGCCACTTCTTCATCGGGTGGTGGTGGAAATCTTGTACAAAATATGACCAATCCGATTAAAATACTGAAGGAGAGCTCCAACAGTGACAACGAGggacatcatcatcatcatcagcatcaCCATCATCAGCATCATCAGCATCATGATTCGTCACAGGAGGGTGGCAGTGCTGAGGATCATCATTTGCAGCAAAATGTTATTATGCCAATTGACATCACGGGATCAACTACGCCAACCGATCACGGTGGAGGAACGACGGTAGTCACGTGCTCACCTCAGCAGCAAACACATGCTGGTGTGCAATGGACGGTGGTCGACTCGAATTATCCGCGTTTTGCTCTATCTAATGCGCCAACCACGACAACAACAGCTGTGGCCACCAATAACATCGGTCTGTCGGCGAGTGACGGATCAGTGGACGGTAACTCTACCACCAATCAGCAGACAaacgcagcagcagcatccgCTGCAGCGGCCGTAGCCCAGGCAGCGGCAGCCGCTGTTGCCGCAGCCGCCCAAACCACACAAATAATGCAATATCAGACGAGCGCCAGTGCGGCTGGTTCCAATGGCACCAATTCCTATTCCCCACAAATAATTTCCGTGAATCCCAACAACATTGGCTACCACCATCAGACATCGACCGAGCCACAATCACCGCAGCACGCACACCACATCCATCACCAGCATCACCATGACACCGACATGATCCAGACGGTGTACACGCACAGCACGCCGAATCAGTCACCGACCaatcagcagcagcaacaacagcaacaacaggtGCAGGTGCAACAGCAGACACAGACGCCCCGACAGAATGCCAACGCTAGTAACACAAGCAGCAGTAGTGGTGGTCAACCGCAAAAGCGAAAACGTTCCGTGAATCCACAAGGTGATGAGAATTTCCTTAGGGCTCTGGATGCTGTACGCTTTGGCGGCATTGGTTTCTGCAAGGCGGCACGTCTCTACGGTGTAAACAATCGGACACTGTGGCTGGAGTACAAAAAACGTGGCTACCCCATAAGTCGGCCATCAATCAAAAATCGCATCAAATTGGAGAATATGACTCCGCCACCGCCATCCACTCCAACCAACGAAGAAAACACCTCCATGGAAACATATGAACAAAATATCCAGCAACAACAAGTCCTCACAACGACCACCGAAGCACAGACCTCCATCATGTGTGCCCCACCGCATGCACACCCAACGACGGGTGGTGGTGGCACATCCACGACCATGGGTGTGATGAGTTTTTTAGACTCACGACACGTTGAGTTCCCAATGGCGGCGCCCGTCTCATCGTCCAGCACCACGGTGCGAACTACACGGTATCCTACGGCCACCGTTGTTGATGGCACTACCGTCAATGTGAATGCGACCACCATGAACATACAGGggattaatttcaatacaatGTAG
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLHNESLVDVTLAAEGRQLQAHKVVLSACSSYFQSLFTTNPCQHPIVILKDVQYSDLKTMVDFMYYGEVNVSQDQLPHVLKTAEMLKIKGLAEMPEGASVTKTENSCEQTDQLTSGSGTDSMWGSNESQQQYQQQQQQQQQMRRSPSPVGVVLSSPSTQTTTATRRKRLRKASTGSGSADRTSDDQHIDNGASVATLGLSQIDPMFGGGAGATSSSGGGGNLVQNMTNPIKILKESSNSDNEGHHHHHQHHHHQHHQHHDSSQEGGSAEDHHLQQNVIMPIDITGSTTPTDHGGGTTVVTCSPQQQTHAGVQWTVVDSNYPRFALSNAPTTTTTAVATNNIGLSASDGSVDGNSTTNQQTNAAAASAAAAVAQAAAAAVAAAAQTTQIMQYQTSASAAGSNGTNSYSPQIISVNPNNIGYHHQTSTEPQSPQHAHHIHHQHHHDTDMIQTVYTHSTPNQSPTNQQQQQQQQQVQVQQQTQTPRQNANASNTSSSSGGQPQKRKRSVNPQGDENFLRALDAVRFGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKNRIKLENMTPPPPSTPTNEENTSMETYEQNIQQQQVLTTTTEAQTSIMCAPPHAHPTTGGGGTSTTMGVMSFLDSRHVEFPMAAPVSSSSTTVRTTRYPTATVVDGTTVNVNATTMNIQGINFNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382842;
- 90% Identity
- iTF_01382842;
- 80% Identity
- iTF_01382179;