Sfus010109.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- bab1
- Assembly
- GCA_026546915.1
- Location
- JANSTS010000005.1:516639-526135[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-17 4.4e-14 51.6 0.0 1 43 58 101 58 103 0.95 2 2 1.2 2e+03 -1.8 0.4 6 15 197 206 196 210 0.88
Sequence Information
- Coding Sequence
- ATGCAGGCCAAACTACTAGAAAATTCTCACTCATGGCTGGGTGCTCCGACGTCATCTATTGCAGATAGTTACCAGTATCAGCTGCAGTCGATGTGGCAAAAGTGTTGGAACACCAACCAGAATCTCATTCATCATTTGCGGTTTCGCGAGCGCGGTCCACTAAAGTCGTGGCGTCCTGAAACAATGGCCGAGGCAATATTCAGCGTGCTCAAAGATGGCCTATCACTGTCACAGGCGGCCCGAAAATACGATATTCCATATCCAACGTTTGTCCTCTACGCGAATCGCGTGCACAATATGCTGGGCCCGTCCATCGATGGTGGCACTGATTTACGGCCCAAGGGCAGGGGTCGGCCGCAGCGAATTTTACTCGGAATTTGGCCAGACGAACACATCAAAGGTGTTATTAAGACGGTTGTGTTTCGCGACGCCAAGGAGTTGAAAGATGACACAATGCACTTAGCATACGGTAGACACTCTCCTGTGTTTCCATTTCAAGACGCCAACATGAATTATCCCGGTGCAAATGGTATTGCACCGCAACAGCAAGTACCCGTCGCCACTGGTGAATCTCTGTCACCAGAAGCAGCCGCCGCAATTTCGGCAGTTGCACGTGGTCTTCACCAGCAAATGCAAATGGCTGCAGCCGCCGGCGGCCATCATCATCATCCTGATGCCGCCAGTTTAGTGGGCGGCTTTAATATGCAGGGACATATGCTTTCGAACAATGGCGGTACAGCTGGTGGAAATATACCGATGCCAAAACTGGGATCACCGGCTGCCTCTGGTCAAATGGGGCACAGTGGTGCCATGCCAATACCAAGACTCGCCTCACCTGCCATGCCTGGTATGCCGAATAACAATGCATCTGGCCATAACATGGCTGGCATGTCGGGAATGCACATTATGTCAGGAATGGCCCAAAATGCCAACGCAGCAGCGAATCCATCAGGTCAACACCAACATTCAGGATTGACTATTTCGCCGACGAACCCCAATATCAACAACAACAATTCTCTTTCTAACAACAACAATATCTCAAACACTTCATCTTCAAATCATTCACAACATCTTCATCAAGCCGGCAATCTCGCTCACTTGTCCGGACTGAATATATCGCGTATTGATTCGACAAATCATGACATGCGAATGCAGAGTTCAGAAGAAAATTCTCTAAGCTCACCTATGGAAATGCCACTTGAGCCGGCAGTAAATCTGGCGGTTGGTGTGGCAGGAATGCCATTTAAATCATCGCGGGATTATGCGTCACCTCGAACGGACAATTTATTCCCAGATGATATCAATGATCTAGTGACATCAAGAAATTGCCCATCTAGGATGGGAAATTTCAAAGAACCGACACCCAACATCAAATTGGAACCCATGACTGAGTGCCGAGGAGAGTAA
- Protein Sequence
- MQAKLLENSHSWLGAPTSSIADSYQYQLQSMWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKDDTMHLAYGRHSPVFPFQDANMNYPGANGIAPQQQVPVATGESLSPEAAAAISAVARGLHQQMQMAAAAGGHHHHPDAASLVGGFNMQGHMLSNNGGTAGGNIPMPKLGSPAASGQMGHSGAMPIPRLASPAMPGMPNNNASGHNMAGMSGMHIMSGMAQNANAAANPSGQHQHSGLTISPTNPNINNNNSLSNNNNISNTSSSNHSQHLHQAGNLAHLSGLNISRIDSTNHDMRMQSSEENSLSSPMEMPLEPAVNLAVGVAGMPFKSSRDYASPRTDNLFPDDINDLVTSRNCPSRMGNFKEPTPNIKLEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382010;
- 90% Identity
- -
- 80% Identity
- -