Scin013695.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- bab1
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:49647845-49649921[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-17 4.7e-14 51.6 0.0 1 43 46 89 46 91 0.95 2 2 1.2 1.9e+03 -1.6 0.3 6 15 186 195 184 199 0.87
Sequence Information
- Coding Sequence
- ATGAGTGTTGGCCTCATCAAGAGTGGGGATAGTTACCAGTATCAGTTGCAGTCGATGTGGCAAAAGTGTTGGAACACCAACCAAAATCTGATTCATCATTTGCGGTTTCGTGAACGTGGCCCCCTTAAGTCATGGCGTCCAGAAACAATGGCCGAAGCCATATTCAGTGTGTTGAAGGATGGACTCTCACTATCACAGGCGGCACGAAAATATGACATTCCGTATCCGACATTCGTCCTATATGCCAATCGGGTGCACAATATGCTGGGTCCGTCCATTGATGGGGGTACCGATTTGCGGCCCAAGGGTAGGGGACGACCACAGCGAATTTTGCTCGGAATATGGCCGGATGAACACATTAAAGGTGTGATTAAGACTGTCGTATTTCGGGATGCCAAAGAGCTGAAAGACGATACAATGCACTTAGCCTATGGTAGACACTCGCCCGTCTTTCCATTTCAAGACGCCAACATGAATTACCCTGGTGCTAACGGCATATGCCCACCGCAACAGCAAGTACCAGTCGCCTCCGGTGAATCTCTCTCGCCTGAAGCAGCTGCCGCCATTTCAGCAGTAGCACGTGGATTACATCAACAAATGCAAATGGCTGCAGCCGCTGGCggccatcatcatcatcctgATGCAGCTAACTTAGTGGGTGGTTTCAATATGCAAAGTCACATGCATTCAAATAATGGTGGATCAGCTGGTGGTAATATTCCAATGCCAAAACTGGGATCACCCGCTGCGTCTGGTCAAATGGGACATTGTGGTGGAATTCCAATGCCGAGACTTGCCTCACCGGCCATTCCCGGTATGCCAAACAACAATGCATCAGTGCTTGGTATGGCCGGCCTCTCGGGGTTGCACATTATTCCGGGTATGGGGGGACAGGGTTCCAACTCGTCGGGTGGTAACTCATCTAGTCAACATCAACATTCCGGTTTGACTATATCTCCAGCCCATCCAAatattaacaacaataattcgctttccaacaataacaacatcTCAACTAATTCATCTTCAAATCATTCACATcatcaacaacatcaacacCAAGGCAACAGTCTTGCACATTTGACCGGACTGAATATATCGCGTATTGAATCTTCAACGAATCCCAACCATGACGTCATGAGGATGCAAAGTCCTGAAGAAAATTCACTCAGCTCACCCATGGAAATGGCATTGGAGCCGGCTGTTAATTTGGCAGTTGGGGTGTCTGGAATGCCGTATAAGTCGTCACGAGATTACACCTCACCGAGGACGGACAATCTGTTTTCAGATACGGATATTAATGACTTGGTTGGATCAAGGAATTGTCCTTCTCGGATGGGTAACTTTAAGGAACcgcaaacaaatattaaattggaaCCTATGGCTGAGTGCCGTGGGGAGTAA
- Protein Sequence
- MSVGLIKSGDSYQYQLQSMWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKDDTMHLAYGRHSPVFPFQDANMNYPGANGICPPQQQVPVASGESLSPEAAAAISAVARGLHQQMQMAAAAGGHHHHPDAANLVGGFNMQSHMHSNNGGSAGGNIPMPKLGSPAASGQMGHCGGIPMPRLASPAIPGMPNNNASVLGMAGLSGLHIIPGMGGQGSNSSGGNSSSQHQHSGLTISPAHPNINNNNSLSNNNNISTNSSSNHSHHQQHQHQGNSLAHLTGLNISRIESSTNPNHDVMRMQSPEENSLSSPMEMALEPAVNLAVGVSGMPYKSSRDYTSPRTDNLFSDTDINDLVGSRNCPSRMGNFKEPQTNIKLEPMAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382840;
- 90% Identity
- -
- 80% Identity
- -