Sfus005908.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010008406.1:16875-19684[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.091 1.6e+02 1.8 0.0 5 32 215 242 214 248 0.88 2 4 2e-13 3.6e-10 39.1 0.0 3 41 266 305 265 308 0.89 3 4 3.2e-18 5.6e-15 54.4 0.0 2 44 320 363 319 364 0.92 4 4 6.4e-17 1.1e-13 50.3 0.1 2 45 371 415 370 415 0.92
Sequence Information
- Coding Sequence
- ATGGAGCCAGTTGATTTGGGCAATAAAAAACACGAACAGCGAGTGTTAAGTGACAAATTGGAGTACTACAAGAGTGAAGTGATTCCTAAATTAAAGCACGATCCAATTGTGGTTagtacgcatgatcgatttattacaacaacagcagctcatcagcagcaggcaggtacaacaaaagacgaccatcacctacaacagcagcagcagcagcagcaacaacaacaacaacagcaacagcagcaccatcaccaacaacagcttcagcatcaggcggcgcagcaccaccacaaaatgttattctctcagcatttgaatgtggcggcggcggtggcggccgagcaacaacagcaggtacaccacggccatcatccgcatcaattgatccatgtgaaacaggagcccgatcctgaccagcagcaacagcagcagcagcagcaacaacaacagcaacagcagcagcagcaacaacaacagcaacaacagcagcagcagcaacaacagcaacagcagcaacaacaacagcagcaggcgatcgacgcgaaaataatcaaacaggagccacgtgcacttatatcggcgatcgacatgcacaaggtggaacagcagaagcagttcagcacagcctcatggccggattattcaatcaacaatgcgttagacgccttgaagacgggcagtatggcactgccgaatacgtcggccgccttcggcatcccagtgccaacgccgcgcaagcggggccgctcgctgggcgacggcaccaaacgagcgccatcCAATAAGCACTGGAACGGGGACGATCTGAATAATGCGCTGGCGGCGCTGCGTACTGGTCAAATCTCTGCGAACAAGGCTTCCAAGGCGTACGGCATACCGCCGTCGACATTGTACAAAGTGGCCAAACAGGAGGGCATTCAGTTGGCGGCGCCTTTTAATGCAGCGCCCACAACTTGGACGGCCGAGGATCTCGAGAAAGCGCTCGAAGCCATTCGCTCAGGGCAGACTTCCGTCTCAAAGGCGGCCACTGAGTTTGGAATTCCGACTGGAACGCTGTACGGACGCTGCAAGCGAAAAGGCATCATCTTGTCTAGATCTAAATCGAAACCATCAAAAGATGCATTGACTAAAGCACTGGAAGCTGTCAGAAATGGTCATATGTCAATTAATCAGGCTGCCATTCACTACAATTTGCCATATGGTTCATTGTATGGACGCATTAAGCGCATCAAGAACAATGCGCAACGCGACGGACTCGATAACAGCTCCCATCAGGACCAGAGCCCGGAGAATTCAGCAACTgtgttgcagcactatcaatgcagtcccggccagtcaagtgcggcggcagcagcagcggcggccgcgcttgttgcacaacagcaacaacaacagcagcagcagcaacaacagcagcagcagcagcagatgcgacaatcaggcccgccaccgccacagcagcagcaaccgcagccgccgccccagcatcaaataccgccaccgccgccgccacactatcagccgccatttttctttttttga
- Protein Sequence
- MEPVDLGNKKHEQRVLSDKLEYYKSEVIPKLKHDPIVVSTHDRFITTTAAHQQQAGTTKDDHHLQQQQQQQQQQQQQQQQHHHQQQLQHQAAQHHHKMLFSQHLNVAAAVAAEQQQQVHHGHHPHQLIHVKQEPDPDQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAIDAKIIKQEPRALISAIDMHKVEQQKQFSTASWPDYSINNALDALKTGSMALPNTSAAFGIPVPTPRKRGRSLGDGTKRAPSNKHWNGDDLNNALAALRTGQISANKASKAYGIPPSTLYKVAKQEGIQLAAPFNAAPTTWTAEDLEKALEAIRSGQTSVSKAATEFGIPTGTLYGRCKRKGIILSRSKSKPSKDALTKALEAVRNGHMSINQAAIHYNLPYGSLYGRIKRIKNNAQRDGLDNSSHQDQSPENSATVLQHYQCSPGQSSAAAAAAAAALVAQQQQQQQQQQQQQQQQQMRQSGPPPPQQQQPQPPPQHQIPPPPPPHYQPPFFFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382007;
- 90% Identity
- iTF_01382007;
- 80% Identity
- -