Scin003962.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:50815285-50818393[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.065 1.1e+02 2.4 0.0 5 32 218 245 216 251 0.90 2 4 2.3e-13 3.9e-10 39.1 0.0 3 41 269 308 268 311 0.89 3 4 3.6e-18 6e-15 54.4 0.0 2 44 323 366 322 367 0.92 4 4 2.1e-15 3.5e-12 45.6 0.1 2 45 374 418 373 418 0.92
Sequence Information
- Coding Sequence
- ATGGAGCCAGTTGATTTGGGCAATAAAAAACACGAACAGCGAGTGTTAAGTGACAAATTGGAGTACTACAAAAGTGAAGTGATTCCCAAATTAAAGCACGATCCAATTGTGGTTAGTACGCATGATCGATTTATTACAACAACAGCAGCTCATCAGCAGCAGGCAGGTACAACAAAAGACGACCATCACCTccagcagcaacaacaccaacaacaacaacaccatcaCCAACAGCAGCTTCAACATCAGGCGGCGCAACACCACCACAAAATGTTATTCTCACAGCATTTGAACGCGGTGGCGGTGGTGGCGGCCTCCGAGCAAGTTCAACAACAAGTTCAGCAGCAAGTGCACCACGGCCATCATCCACATCAGTTGCTGCATGTGAAACAGGAACCTGATCCtgatcaacaacaacagcagcagcagcagcaacaacagcaacagcagcagcaacaacaacagcagcaacagcagcaacaacaacagcagcaacaacaacaacagcaacaacagcagcaacaacaacagcagcaggcaattgatgcaaaaatcataaaacaggAGCCACGTGCACTTATATCGGCGATCGACATGCACAAAGTGGAGCAGCAGAAGCAATTTAGCACCGCCTCATGGCCCGACTACTCCCTGAACAATGCGTTAGACGCTCTGAAGACGGGAAGCATGGCCCTGCCGAATACGTCGGCCGCCTTTGGCATCCCAGTGCCGACGCCACGCAAACGGGGTCGATCCCTCGGCGATGGCACAAAACGGGCGCCATCCAATAAACACTGGAACGGTGATGATCTGAACAATGCGCTGGCGGCACTGCGCACCGGTCAAATTTCAGCGAATAAGGCTTCCAAGGCGTACGGCATACCGccgtcaacattgtacaaagTTGCCAAACAGGAGGGCATTCAATTGGCAGCGCCATTTAATGCGGCGCCCACCACATGGACAGCCGAGGATCTCGAGAAAGCGCTCGAAGCCATTCGCTCAGGGCAGACTTCCGTCTCAAAGGCGGCCACTGAGTTTGGCATTCCGACggGAACGCTGTACGGACGCTGTAAGCGAAAAGGCATCATTTTGTCTAGATCTAAATCAAAACCATCTAAAGATGCATTGACTAAAGCATTGGACGCTGTCAGaGCTGGCCACATGTCAATTAATCAGGCTGCCATTCATTACAATTTGCCATACGGTTCATTGTACGGACGCATTAAACGCATCAAGAATAATGCGCAACGCGACGGACTCGACAATAGCTCCCATCAGGATCAGAGTCCTGAAAATTCGGCAACTCAGGTGCTGCAGCACTATCAATGCAGTCCAGGACAATCGAGTGCGGCGGCAGCAGCAGCTGCGGCCGCCCTCGCTGcccaacagcagcaacaacaacagcagcagcaacaacaacagcaacagcagcagcaaatgCGACAAACTGGTCCGCCACCGccacaacagcagcaaccGCAACCGCCGCCACAGCATCAATTACCGCCACCGCCGCCACACTATCAGCcgccatttttctttttttga
- Protein Sequence
- MEPVDLGNKKHEQRVLSDKLEYYKSEVIPKLKHDPIVVSTHDRFITTTAAHQQQAGTTKDDHHLQQQQHQQQQHHHQQQLQHQAAQHHHKMLFSQHLNAVAVVAASEQVQQQVQQQVHHGHHPHQLLHVKQEPDPDQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAIDAKIIKQEPRALISAIDMHKVEQQKQFSTASWPDYSLNNALDALKTGSMALPNTSAAFGIPVPTPRKRGRSLGDGTKRAPSNKHWNGDDLNNALAALRTGQISANKASKAYGIPPSTLYKVAKQEGIQLAAPFNAAPTTWTAEDLEKALEAIRSGQTSVSKAATEFGIPTGTLYGRCKRKGIILSRSKSKPSKDALTKALDAVRAGHMSINQAAIHYNLPYGSLYGRIKRIKNNAQRDGLDNSSHQDQSPENSATQVLQHYQCSPGQSSAAAAAAAAALAAQQQQQQQQQQQQQQQQQQMRQTGPPPPQQQQPQPPPQHQLPPPPPHYQPPFFFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382837;
- 90% Identity
- iTF_01382837;
- 80% Identity
- -