Scin009249.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- ZFX
- Assembly
- GCA_963854165.1
- Location
- OY974083.1:53318395-53319426[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.11 5.3e+02 0.6 0.0 27 48 180 201 175 205 0.82 2 5 2e-05 0.1 12.5 0.1 21 50 202 231 198 233 0.86 3 5 0.016 79 3.3 0.4 21 48 230 256 228 263 0.82 4 5 0.0021 10 6.1 0.2 21 51 286 316 267 317 0.82 5 5 8.5e-05 0.43 10.5 0.0 21 44 314 337 312 341 0.89
Sequence Information
- Coding Sequence
- ATGTCGTTTGACCTTCTAATAAATCATGTCAAAGAGAATTCCTGTAGTGGTCAGGGATCACACGAGAACTTTCATCGaccaacaaattttgaaacaatcaCCACGTCATATGAGTCTTCTGATTTAGATGATGAGGtgggaaacattaaaaataattcaattgacGATCCGGAAACAGCTGATTCTAATGAGGAgttaaaatgcattacaatTGACGACGATTCGAATGACGTTTTTAAGGATCTCTTGTTACTTAAAAATCAAACTGTAACGGAAAACGTTGTGTCATCAGAAATAAGtgaaaacaatcaaacaatcCAAAATGTAGCAACAAAGCGACTCAAATTCAAATGCACTCAATGTTCTGCATCCTTTAATAGCAAGCCcgatttttttacacattacgACGAACACATGCAGGAGCGTTATCACAAAAGTCGACTCGCACCACCCAACCAAAGTAGGgcaacaacaattcaaaagaaattacGATTACCAATGCCGAAACCGCCCCTGGTGCGAGTAAAAAAACATCCCTGCACGGTGTGTGGCAAATTTTTCACGGAAAAAAGCAATCTCAAACAACACATGCGAATCCACACGGGTGAGAAGCCTTTCAAGTGCCCAATCTGCAAGAAAGCATTCACTCAATCCAGTTACATTCGTCTGCACATGTACATCCACAAGGATGAAAAACCCTACCAATGCAACATTTGTGGCATCACGTATCGCGTGCCCAGCCGATTGACCAGTCACATGCTGCGTCACACCAACACCCGACCGCACAAATGTGATGTGTGCGACAAGCGATTTTACTGCAGTGGACAGTTGAAGGATCATGCGCGAATTCACACGGATGAGCGTCCGTTTGAGTGTCCGAATTGTGACAAAAAGTTTCGACGGCGCGACACTTTGAAGCAGCATGCGAAGCTGCACACTGGTGAGAAGCCGTACAAGTGTAAGATTTGTTTTGCTGTGTTTGCGCAGTTGCCGGGATTGCACAATCACATGAAGAGTCATCAGGAGTCGTAA
- Protein Sequence
- MSFDLLINHVKENSCSGQGSHENFHRPTNFETITTSYESSDLDDEVGNIKNNSIDDPETADSNEELKCITIDDDSNDVFKDLLLLKNQTVTENVVSSEISENNQTIQNVATKRLKFKCTQCSASFNSKPDFFTHYDEHMQERYHKSRLAPPNQSRATTIQKKLRLPMPKPPLVRVKKHPCTVCGKFFTEKSNLKQHMRIHTGEKPFKCPICKKAFTQSSYIRLHMYIHKDEKPYQCNICGITYRVPSRLTSHMLRHTNTRPHKCDVCDKRFYCSGQLKDHARIHTDERPFECPNCDKKFRRRDTLKQHAKLHTGEKPYKCKICFAVFAQLPGLHNHMKSHQES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382339;
- 90% Identity
- iTF_01382339;
- 80% Identity
- iTF_01382339;