Scin010454.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- Aef1
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:6851580-6851987[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.015 77 3.3 0.0 22 47 7 32 4 37 0.82 2 4 1.5e-05 0.075 12.9 0.0 21 52 34 65 32 66 0.88 3 4 0.016 81 3.2 0.1 21 44 62 85 60 90 0.86 4 4 4.2e-05 0.21 11.5 0.1 21 46 90 115 85 124 0.87
Sequence Information
- Coding Sequence
- ATGACGATAACCAAGCTAGATAAACCGTTTCATTGCTCCGTATGTGACAAGGAATTTCGCCAATTGAGCACCCTGTCGAATCACCAAAAAATTCACACTGGCGAGAAACCGTACAAATGTGACATATGTGATAAGTACTTTCGACAATCCAGTACCCTTACAAATCATGTGAAAATTCACACTGGCGAAAAGCCATTCAGTTGCAATTGTTGTGGCAAACAATTTCGACAATTGAGCACACTCACCAATCATCAAAAGATTCACACGGGTGAGAAACCGTTTGAGTGTGCCGTgtgcaaaaaacaatttcgacAATCCAGCACCTTGAATAATCACATTAAGATCCATGTCGGTGACAAACATTTTCTGCAGGAGTTGCAGCAGGAATTGAAGCAGGAAAACACATGA
- Protein Sequence
- MTITKLDKPFHCSVCDKEFRQLSTLSNHQKIHTGEKPYKCDICDKYFRQSSTLTNHVKIHTGEKPFSCNCCGKQFRQLSTLTNHQKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVGDKHFLQELQQELKQENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164355;
- 90% Identity
- iTF_01382420;
- 80% Identity
- iTF_01382420;