Basic Information

Insect: Sylvicola cinctus
Gene Symbol: TRERF1
Assembly: GCA_963854165.1
Location: OY974084.1:11288349-11302154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 6.9e-05 0.0035 17.5 0.2 2 23 159 180 158 180 0.97

2 6 1.3e-06 6.8e-05 22.9 1.3 1 23 186 208 186 208 0.99

3 6 0.0001 0.0053 16.9 2.6 1 23 214 238 214 239 0.95

4 6 0.00056 0.029 14.6 0.8 2 23 385 406 384 406 0.97

5 6 0.0042 0.21 11.9 0.7 1 23 1352 1376 1352 1376 0.95

6 6 0.00053 0.027 14.7 0.8 1 23 1453 1475 1453 1475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	6.9e-05	0.0035	17.5	0.2	2	23	159	180	158	180	0.97
2	6	1.3e-06	6.8e-05	22.9	1.3	1	23	186	208	186	208	0.99
3	6	0.0001	0.0053	16.9	2.6	1	23	214	238	214	239	0.95
4	6	0.00056	0.029	14.6	0.8	2	23	385	406	384	406	0.97
5	6	0.0042	0.21	11.9	0.7	1	23	1352	1376	1352	1376	0.95
6	6	0.00053	0.027	14.7	0.8	1	23	1453	1475	1453	1475	0.98

Sequence Information

Coding Sequence: ATGTGCAGCGCATCAATGGGTGCTGAAGGTTCGGTCACATTGCAGTTGCGTGAAGCTGTGCAAGCGCCAGAGTCCAACGGTACAACAGCCCTCACCATTGGTTATCCAGATTCAGACATTTTAGCTGATATGTTGGGGAATATACAAGCGGCAGCATCCTCAGCAGCATCGACAATATCCAGTAGCACAACGGCTGTGGGCGGTGGAGGCGGTGGTGGTGCTACTAAAACCGTCGTCTCCTCCATTGTCTCTTCCAGCAGCAATAGCAACAGCAGCAATAACAGTAGTAACAACAGTGAATGCAGTAGCAGTAGTAGCAATTCATCCAGTGTTGCGACGACACTTATCAAACAGGGTGGTGTCTCGTCTGTCAATAGCACGGTCGAGACACCCAGCACATCCACACAACAGACAGTGACGGTTGTCAAAAAGTCAAGGCCGAAAACGGCGTCACCGACTAGACATGGTCCGCAACAGTGTCAGGTATGCAGCAAAGTGTTTGGCAATGCATCAGCGCTGGCTAAACATAAGTTGACGCACAGCGATGAGAGAAAATACGTATGTGGGATGTGTTCCAAGGCATTCAAACGACAAGATCATCTAAACGGACACATGCTGACACATCGCAATAAAAAACCGTATGAATGCAAAGCTGAGGGTTGTGGCAAATCCTATTGTGATGCAAGATCACTGCGACGGCACACCGAGAATCATCACAGTGCCCTGGCAATGACGCCGACAACACCGAATCAATCATTGTCATCATCCACAGGCCCACCCACCGGCCTAAGTTTGTCCCCAGCCACAGCAAGTgGTGATGCAAGCTCACCCCATGGCGCCACATGCATTCAGTACACCAATGGTGGTGACGGTTCGAAGCCGTCATCACCAAGCTCACCGGCTGGCGCTGGCAATGAAGGTCTCACACGCCAGCAATTGGATCTCATTAGTCAAATTATGCAGCAAACAAAGCAGGCAAATGCTGGCCTGACGACGGCTGCTGGCCATAAGCAAGTTCAAAGGCCACGTACATGGAACATGCAGACACAATTGCAGCAAACACAATCTAAACCATCTTCAAATCCAGAAAGTCCCACAACATTAATAACGGTGAGTGCGTCAAATGCACCCAAAGTCGAGCAAAAGCCAGTCGAGTGCAATTTATGCCATCGTAAATTTAAGAACATACCCGCCCTTAATGGGCACATGCGACTGCATGGTGGATACTTCAAAAAAGACACCGAAATAAAGAAATGTGATAAAAAGGAGACACCAGGACCTCCTCTACAAACAGCCAGCGTCGGCGTTCGCGCTCTTATTGAAgagaaaattattaacaaacgCAGTAAAGACTTAAAGGGTGCTTTTGTCATTCCCGCACCACCGTTGCTATCGTCGCGTCGACTCTCTGACGCTGATAGTTTCGTGTCATTGAAAACCTCAACGACAAACGGTGGCTCGCCAAATCATGCAACAGTGGTGGCTGCAAGTGACTCAACCACACAAACCACAACAGCATCGACCAGCATAGTTGTCGCTCAAACTACAACACACAGTACAATAAATGTTCAGCCGAAACATCAACAATCGATTAGTGTGTCACCGCCGGAAGTTGTAAAAGATGCGACCCTAATCGAGTTGCTAAAGCGTGGCACCAAAGTGGCTGTAAAACGCACCTGCTCCGATCCCGGCCAGTTGTCATTTAGTTCGACAACGACCACCCAcacacaccaacaacaacaacaacagcaacaacaacagcaacagcatcaacagcaccagcaacagcaacagcaacagcaacagcaacagcaacagcagcagcagcagcaacaacaacaacatcatcatcagcaaTCTTCATCACCAACCACAATCACCCTTCCATCGAGCACATCCCTTTCGACACCGACCACACCCAACTCCACACCACCATTGGCGATTTCTTTGAGCGGTGGCAACACCACACCATTGGCACTGACAATATCGCAGACACCCAGTGACTCGGGTGATGTCTTTACGCTGGCCTACTCCACCGACACCTCATCAGGCACATTTTTCGGTGATAACGACATTTACAGTGTGTCTGACACGGCAATGCTGTTGCAAGCAGTCGACTCGATTCAATTGCTGCAGGATGCATCATCCCCCGATCAACTAGATGATATGCCGTCGCTTAACGATTACACGCTAACCGACAGCAGTGGTGGACTAAATGACACAACAAGCATGTCTAGTGGCTTCACACCATCACGTCAATTACAAGCTGTCCTCAACTCACCACTTCCGGAGAGTCTTGCCGAATTCAGTGCACTCCATTCCAAAGACTATGTACTGTACGGCTGCACAAACACCGGATCACCGCATACACAGTCATCAGCGTCACCACTTCCATCGCCGTTGGCATATCCGACGCCGCCTGCAAGTCATGAAGCTGTTGCACAAGCGTCACCGTTTCTCGACGACTCACACCATTTCTCTGATGCGAATTCCTTTTTCGACGACAAAAAGAACATCAACTTTTTGGAGGAGAATGGCGCTGAGTTCTTCAAGGATCCCAAAGATGAACAACTCACTGATAACGAGCGAATACTCAAGCTCAAGAATGAATTGTTCAACGATTCCAAATCAGTGCTGGAGCGAAGTCACTACTTTAAGCCACACAATGATAATGACGGCATGCGAATAAATGTGCACAATCAACGTACGCTCGCCGATTTCAATCACCAGAATTTGTCGTTCCTTGATGAGccacaaaattatttggatGATGCACGCAACACATCGTCACCACTGTCTGCGGCCTTTTTCACTGCTACCATGTCCAGTGCGGAGGAGGTAAAGGAAGCACTGGAAGAGGTGTTGCCCAATGAAAATTTGTGCAATGGTGACCAACCGAATGACATTGACTTGTACTATTTGCCTGTACTTCCGTTGCAATCACAAATGATGCCCAACTCGGAAGACCCCCTGCTGTCGTCATCGCCAAAGGATTTCTCCAACAAGCCACATCCACATAAATTCGATTTTAGTGCATTTAATCCGCCAAGCATTAAGAAGCAACGTCCCAACGATGACAAAGCGAGTCAGTGCAGCGTTATGGAGGAGGTGGATATTAAACCACAGATCAATCAAATTGAGCTTACATCTAAATTAAACGAAGTGTTCTTAAGCCCCAACAGCATTAATTGCAATCCGCCAATGTTGGCAGCACCTCCAAAATCCAATCACTGTTCCTCCCTTCTTCGGAAACGCCTGCACAAAGACATTATGaagaaacacattttgtacaaGTCCAAATTGAGACCAGCCTCTTCGTGCACTCACTACACTCCAACGCCACTGCTTAATCCCGACCGCATTGCACCGGGACTGTTCTCATCTGTGGCCCACATGATGGAGGATGATATGCTCAATTTTGACTTCACCGAGAGCAATAATTGTGTGTCCGAGTTCTTGGACAAATCAAAGGTCAACATTGGACATGACTATCAGGCCGTTATTCCACCACCGTTCACTGAGTCAAATCGTCTGGACTATTCAGAGGATAAAATGCAGTGGGATCCCAGCATAGTGAGCGATGAGAAAGCGGTGCAACGCTACATTTGTCTGGCCAAGTCGTCGGGCATTCCATTGGGTTGTAACTCTGAGGAGTCTGCGCTGAAGCGACTTATGGAAGCGAATGGTGAGACCCACATCGCCATATTGTCAATGTTGCAAGCGCCAAATACATTACCGCACAAGCAGTGGTCCACCATAGAAATTGAGATATTCCTGAAGGGTCTCGAAACGTATGGAAAAGACTTTTATCGGATTTCTAAAGAGATTCCCACCAAATCAACGGGCGAATGTGTTCAACTGTACTACTTTTGGAAAAAGCTTTGCGTTGATTACAAAACCACACATTTGCAAAAtgtgattgaaataaaacaagagATCATTGAGCCTCATATACTGCAGTCAGTGCCACCATCCGCCATACATCATCAGCATCagcaacatcatcatcatcatcatcatgtaACTACAGCAACACATTCCGAAATGCGACCGCATGTCTGCGAGATGCCCGACTGTTCGGCGAGCTTCACATCGAAGGCTGCACTACACGGACACACACGCATCCATTGCATTGgccgcaacaacaacaacaacaacaacatgcatcttaataacaacaaccaccaccacagcaacaaccacaaccacaaccacaataacaacaacaacaataataacagcAATAGCAACAACCACAATAGCAACATGAGCGGACTAACAACAATGAGTAATGGTCACAGCGGTAACACATCACAAATGACAGGTAGCTCGCATGGCTTAACAGCAAAAGATGATTTTCCCTGCAAGGTGTGCGGCAAaatatttaataaaataaaaagccgAAGTGCACACATGAAGTCCCATAGACCCATGGAGCAGGAAGTGCAGAGTGTCTCAACTTAA
Protein Sequence: MCSASMGAEGSVTLQLREAVQAPESNGTTALTIGYPDSDILADMLGNIQAAASSAASTISSSTTAVGGGGGGGATKTVVSSIVSSSSNSNSSNNSSNNSECSSSSSNSSSVATTLIKQGGVSSVNSTVETPSTSTQQTVTVVKKSRPKTASPTRHGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCGMCSKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSALAMTPTTPNQSLSSSTGPPTGLSLSPATASGDASSPHGATCIQYTNGGDGSKPSSPSSPAGAGNEGLTRQQLDLISQIMQQTKQANAGLTTAAGHKQVQRPRTWNMQTQLQQTQSKPSSNPESPTTLITVSASNAPKVEQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTEIKKCDKKETPGPPLQTASVGVRALIEEKIINKRSKDLKGAFVIPAPPLLSSRRLSDADSFVSLKTSTTNGGSPNHATVVAASDSTTQTTTASTSIVVAQTTTHSTINVQPKHQQSISVSPPEVVKDATLIELLKRGTKVAVKRTCSDPGQLSFSSTTTTHTHQQQQQQQQQQQQHQQHQQQQQQQQQQQQQQQQQQQQQHHHQQSSSPTTITLPSSTSLSTPTTPNSTPPLAISLSGGNTTPLALTISQTPSDSGDVFTLAYSTDTSSGTFFGDNDIYSVSDTAMLLQAVDSIQLLQDASSPDQLDDMPSLNDYTLTDSSGGLNDTTSMSSGFTPSRQLQAVLNSPLPESLAEFSALHSKDYVLYGCTNTGSPHTQSSASPLPSPLAYPTPPASHEAVAQASPFLDDSHHFSDANSFFDDKKNINFLEENGAEFFKDPKDEQLTDNERILKLKNELFNDSKSVLERSHYFKPHNDNDGMRINVHNQRTLADFNHQNLSFLDEPQNYLDDARNTSSPLSAAFFTATMSSAEEVKEALEEVLPNENLCNGDQPNDIDLYYLPVLPLQSQMMPNSEDPLLSSSPKDFSNKPHPHKFDFSAFNPPSIKKQRPNDDKASQCSVMEEVDIKPQINQIELTSKLNEVFLSPNSINCNPPMLAAPPKSNHCSSLLRKRLHKDIMKKHILYKSKLRPASSCTHYTPTPLLNPDRIAPGLFSSVAHMMEDDMLNFDFTESNNCVSEFLDKSKVNIGHDYQAVIPPPFTESNRLDYSEDKMQWDPSIVSDEKAVQRYICLAKSSGIPLGCNSEESALKRLMEANGETHIAILSMLQAPNTLPHKQWSTIEIEIFLKGLETYGKDFYRISKEIPTKSTGECVQLYYFWKKLCVDYKTTHLQNVIEIKQEIIEPHILQSVPPSAIHHQHQQHHHHHHHVTTATHSEMRPHVCEMPDCSASFTSKAALHGHTRIHCIGRNNNNNNNMHLNNNNHHHSNNHNHNHNNNNNNNNSNSNNHNSNMSGLTTMSNGHSGNTSQMTGSSHGLTAKDDFPCKVCGKIFNKIKSRSAHMKSHRPMEQEVQSVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01382025; iTF_01383263; iTF_01382858;
90% Identity: iTF_01382025;
80% Identity: iTF_01382025;