Basic Information

Insect: Sycophila texana
Gene Symbol: su(Hw)
Assembly: GCA_035582955.1
Location: JAWWEN010052474.1:28495-39170[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.25 29 6.2 3.3 1 23 24 47 24 47 0.96

2 14 0.00068 0.078 14.3 0.2 2 22 54 74 53 74 0.93

3 14 0.015 1.7 10.0 1.8 1 23 82 105 82 105 0.96

4 14 0.65 75 4.9 2.0 2 20 166 184 165 186 0.83

5 14 9.7e-05 0.011 16.9 2.0 3 21 204 222 203 223 0.95

6 14 0.012 1.3 10.4 0.7 1 23 231 254 231 254 0.96

7 14 0.00011 0.013 16.7 1.8 1 19 263 281 263 284 0.94

8 14 0.0031 0.35 12.2 7.6 1 23 292 315 292 315 0.96

9 14 2.5 2.9e+02 3.0 6.7 1 21 551 571 551 572 0.94

10 14 1.7e-05 0.002 19.3 1.5 2 23 581 603 581 603 0.96

11 14 0.00036 0.041 15.1 0.4 1 21 613 633 613 634 0.93

12 14 0.057 6.5 8.2 3.5 1 23 642 665 642 665 0.96

13 14 7.8e-05 0.009 17.2 1.3 1 19 675 693 675 695 0.96

14 14 0.41 47 5.5 4.1 1 23 702 725 702 725 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.25	29	6.2	3.3	1	23	24	47	24	47	0.96
2	14	0.00068	0.078	14.3	0.2	2	22	54	74	53	74	0.93
3	14	0.015	1.7	10.0	1.8	1	23	82	105	82	105	0.96
4	14	0.65	75	4.9	2.0	2	20	166	184	165	186	0.83
5	14	9.7e-05	0.011	16.9	2.0	3	21	204	222	203	223	0.95
6	14	0.012	1.3	10.4	0.7	1	23	231	254	231	254	0.96
7	14	0.00011	0.013	16.7	1.8	1	19	263	281	263	284	0.94
8	14	0.0031	0.35	12.2	7.6	1	23	292	315	292	315	0.96
9	14	2.5	2.9e+02	3.0	6.7	1	21	551	571	551	572	0.94
10	14	1.7e-05	0.002	19.3	1.5	2	23	581	603	581	603	0.96
11	14	0.00036	0.041	15.1	0.4	1	21	613	633	613	634	0.93
12	14	0.057	6.5	8.2	3.5	1	23	642	665	642	665	0.96
13	14	7.8e-05	0.009	17.2	1.3	1	19	675	693	675	695	0.96
14	14	0.41	47	5.5	4.1	1	23	702	725	702	725	0.94

Sequence Information

Coding Sequence: ATGAAGTTCGATGACCGACTGAGTTTAAGGCAGCACAGGCTACATCAGTGTGTGAAGAGTTCTACCCTCTACAAATGCGAACACTGCAACTTCTTGACTGTACATAAGGGAGACCTACCCAGACATCTGGAGCGTAAACACGGAGAACGCGAGAACTTGCCTTGTCCTAATTGTGGCAAAAAGTACAAGGGCGACTTCAATCTGCAGCAACATCTGAAGCGAGACTGCAACGTTGTCAAGCGATTTGCTTGCGCCCATTGCAATTATAAAGCAAAGAGAAAATACAGTGTCGCTTCTCATATTCGACTGAAGCATAAATGGaCAAGGGTATCCAAACTACCAATGGAAAAATTAAGGAGCGTGGAGCAGAAAGATATACTTGTAAGCCCACCAGAGCTGATCTTGCTGCACTGCCCCAAATGCCAGGACTCCTTCGAGAAGCCGCCGCGCAAGAAGGTGAGCTCCTGCACGCGCTGCGACTCTCCGTTTCTGCTACAGTGCTCCAAATGCCGCAAGATTTTCCGCAAGTACATGACCCTTTACTGCCACATAAAGGCAATCTGCGGTAACCGCAATCCCGAGGCCGAGCCCAAGGACGGTCGAGTGGCCTGCTCCGACTGCGGCACCAAGTTCTGCAGCTACGAGAATCTTCGCCGACACAAGCGGCTCACCTGCCAGAAGCAGGCGGCGTACAAGTGTACCTCCTGCAGCTTCGTCAGCCGGTACAAGGCCTCTTTGGAGCTGCACGTGAGGGGCCAGCACCTGGGGAATGGCACGGAGGAGGTGCATCGGTGCGGCTGGTGCGGAAAGGGATTCAGCCACTCACAGACTCTCAAGCGACACGAGACCTACATCTGCGGCAAAGAGAAGAACTTCTTCTGCGGTCACTGCGACTACAAGTGTTATCTGAAATATCAGCTGAAGAAGCACATGAGGGTTAAGCACAAGCGGCTCTTCACTAAGGGAGAAACATTCCCTCGGTTATCCGGTGGAATTTACATAAAGGAAGAGATAACCATTGAATCTCAATCATCTGCAGATGTTCAAACTGAGTCCTTCACTGAGGGAAAAAGTCATCCGTctgaTTCATTTATATACATCAGCGATAGTACTGCGGATGAAGATTCTAATACGGGCAATGGATCTGGCAACAATATTCATCAAGATGCGCCAAACAGTGAAGTTGACATTGACGAACATCAAGATATTATTCACATAAAGGAAGAAATTATATCAGACGATGAACTTCTGTGTTATTCTCCTATTAATTttgaagAGATACATGAGGATTTTGAGGTAACCGAAGAAAGCGTTGACAAGTTTTCCTTTGAAAAGATTGGAACTGTACCAAATCCTATTACTACAATCCCGGCAGATGTAAATGATGAATCAATTATTACCCTCGTAAATGAATCGATTTTTACTCCTATGAATGAATCAGTTATGATACAGACGGAAGAAAGCAAAAGGATTGAAGAGCCAAAAGCGGGTGGATCACATGAAGCAGTTGTAGTGCCTGCACATACATTGATTAGACGGCAGTGGGGTCAGCTAAAGTCCGTGCTGCACTGCCCCAGCTGCAAGGACGACCCCCGGCACGTCCTGTCCAAGAACCAGGCCAGCTGCCCAGTATGCAAGAGCCCCTGTGAGTACCAGTGCCAGTCGTGCAACAAATTCTACAAGTGCCTGGAGCACCTGAACAACCACGTGTGCATGGTACTGGTCAAGACGAAGCCGCCCTCGTGCACCCAGTGCGGCAGCACCTTCTCCTCGATGTCGTCGCTGCGCAGCCACATGCGCGTCAAGCACATCCGGGACAGCAAACAGGCGAAGAAGCACGTCTGCTCCAGGTGCAACACAGTGTTCAGCCGACTGAGCGGCCTGCGCACTCACGAGCAGGTGGTGTGCGGCAAGAGCAAGCGATTCAGCTGCGACCTTTGTCCCTTCGTCACGGGCTACAGCAGCTGCCTCAGGAAGCACCGCACCAGGAAGCACGGCCAGAGCCCCGACGGCCAGAACTGCTTCGTCTGCACCAAGTGCGGCAGGGCCTACAAGACGCCGGGCCACTTCCAGAAGCACTTCGAACTGGTCTGCCTCAAAGAGTACGCCTGCGAGCACTGCGACTGCAAGACTAGCAGCAGGCTGCTGTTCCACCAGCATCTCGCCATCGCCCACCCCGACGTGCTGGGAAAGAGGAAGTCACAGCGGCATAGGAGACACGTCGatcgatga
Protein Sequence: MKFDDRLSLRQHRLHQCVKSSTLYKCEHCNFLTVHKGDLPRHLERKHGERENLPCPNCGKKYKGDFNLQQHLKRDCNVVKRFACAHCNYKAKRKYSVASHIRLKHKWTRVSKLPMEKLRSVEQKDILVSPPELILLHCPKCQDSFEKPPRKKVSSCTRCDSPFLLQCSKCRKIFRKYMTLYCHIKAICGNRNPEAEPKDGRVACSDCGTKFCSYENLRRHKRLTCQKQAAYKCTSCSFVSRYKASLELHVRGQHLGNGTEEVHRCGWCGKGFSHSQTLKRHETYICGKEKNFFCGHCDYKCYLKYQLKKHMRVKHKRLFTKGETFPRLSGGIYIKEEITIESQSSADVQTESFTEGKSHPSDSFIYISDSTADEDSNTGNGSGNNIHQDAPNSEVDIDEHQDIIHIKEEIISDDELLCYSPINFEEIHEDFEVTEESVDKFSFEKIGTVPNPITTIPADVNDESIITLVNESIFTPMNESVMIQTEESKRIEEPKAGGSHEAVVVPAHTLIRRQWGQLKSVLHCPSCKDDPRHVLSKNQASCPVCKSPCEYQCQSCNKFYKCLEHLNNHVCMVLVKTKPPSCTQCGSTFSSMSSLRSHMRVKHIRDSKQAKKHVCSRCNTVFSRLSGLRTHEQVVCGKSKRFSCDLCPFVTGYSSCLRKHRTRKHGQSPDGQNCFVCTKCGRAYKTPGHFQKHFELVCLKEYACEHCDCKTSSRLLFHQHLAIAHPDVLGKRKSQRHRRHVDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380870;
90% Identity: iTF_01380870;
80% Identity: -